Evidence map›Paper›PMID 25870267›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Cryo-EM structure of the tetracycline resistance protein TetM in complex with a translating ribosome at 3.9-Å resolution.

Stefan Arenz, Fabian Nguyen, Roland Beckmann, Daniel N Wilson

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 64 citations in OpenAlex.

  1. Multiple Independent Origins of TnAntibiotics (Basel, Switzerland) · 2026
    Article
  2. Interplay of the ribosome A and CAR sites.NAR genomics and bioinformatics · 2026
    Article
  3. [Molecular mechanisms underlying the development and spread of antibiotic resistance].Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. The tigecycline resistance mechanisms in Gram-negative bacilli.Frontiers in cellular and infection microbiology · 2024
    Review
  10. Ribosome-targeting antibiotics and resistanceRSC medicinal chemistry · 2023
    Review
  11. Article
  12. Whole-genome sequencing ofFrontiers in microbiology · 2023
    Article
  13. Purine metabolism regulatesFrontiers in microbiology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Stefan ArenzGene Center and Department for Biochemistry, University of Munich, 81377 Munich, Germany; and.
Fabian NguyenGene Center and Department for Biochemistry, University of Munich, 81377 Munich, Germany; and.
Roland BeckmannGene Center and Department for Biochemistry, University of Munich, 81377 Munich, Germany; and Center for integrated Protein Science Munich (CiPSM), University of Munich, 81377 Munich, Germany.
Daniel N WilsonGene Center and Department for Biochemistry, University of Munich, 81377 Munich, Germany; and Center for integrated Protein Science Munich (CiPSM), University of Munich, 81377 Munich, Germany wilson@genzentrum.lmu.de.
Ludwig-Maximilians-Universität München · DECenter for Integrated Protein Science Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome protection proteins (RPPs) confer resistance to tetracycline by binding to the ribosome and chasing the drug from its binding site. Current models for RPP action are derived from 7.2- to 16-Å resolution structures of RPPs bound to vacant or nontranslating ribosomes. Here we present a cryo-electron microscopy reconstruction of the RPP TetM in complex with a translating ribosome at 3.9-Å resolution. The structure reveals the contacts of TetM with the ribosome, including interaction between the conserved and functionally critical C-terminal extension of TetM with a unique splayed conformation of nucleotides A1492 and A1493 at the decoding center of the small subunit. The resolution enables us to unambiguously model the side chains of the amino acid residues comprising loop III in domain IV of TetM, revealing that the tyrosine residues Y506 and Y507 are not responsible for drug-release as suggested previously but rather for intrafactor contacts that appear to stabilize the conformation of loop III. Instead, Pro509 at the tip of loop III is located directly within the tetracycline binding site where it interacts with nucleotide C1054 of the 16S rRNA, such that RPP action uses Pro509, rather than Y506/Y507, to directly dislodge and release tetracycline from the ribosome.

Indexed as

Protein BiosynthesisTetracycline ResistanceBacterial ProteinsBinding SitesCryoelectron MicroscopyEnterococcus faecalisProtein Structure, TertiaryRibosomesRNA, BacterialRNA, Ribosomal, 16SBacterial ProteinsRNA, BacterialRNA, Ribosomal, 16SantibioticresistanceribosomeTetMtetracycline

Identifiers

PMID25870267
PMCPMC4418892
OpenAlexW1994950950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.