Evidence map›Paper›PMID 25870062›Full record

ArticleAntimicrobial agents and chemotherapy2015

Genetic and biochemical characterization of OXA-405, an OXA-48-type extended-spectrum β-lactamase without significant carbapenemase activity.

Laurent Dortet, Saoussen Oueslati, Katy Jeannot, Didier Tandé, Thierry Naas, Patrice Nordmann

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  4. Molecular analysis of OXA-48-producing Escherichia coli in Switzerland from 2019 to 2020.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022
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  5. Review
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  12. Role of Arginine 214 in the Substrate Specificity of OXA-48.Antimicrobial agents and chemotherapy · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The Global Ascendency of OXA-48-Type Carbapenemases.Clinical microbiology reviews · 2019
    Review
  18. Rapid detection of IMP, NDM, VIM, KPC and OXA-48-like carbapenemases from Enterobacteriales and Gram-negative non-fermenter bacteria by real-time PCR and melt-curve analysis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  19. A 2.5-years within-patient evolution of aAntimicrobial agents and chemotherapy · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Laurent DortetINSERM U 914, Le Kremlin-Bicêtre, France Associated National Reference Center for Antibiotic Resistance, Le Kremlin-Bicêtre, France Faculty of Medicine, South-Paris University, Le Kremlin-Bicêtre, France Bacteriology-Hygiene Unit, Bicêtre Hospital, Assistance Publique/Hôpitaux de Paris, Le Kremlin-Bicêtre, France.ORCID http://orcid.org/0000-0001-6596-7384
Saoussen OueslatiINSERM U 914, Le Kremlin-Bicêtre, France.
Katy JeannotAssociated National Reference Center for Antibiotic Resistance, Le Kremlin-Bicêtre, France Besançon Hospital, Microbiology Laboratory, Besançon, France.
Didier TandéBrest Hospital, Microbiology Laboratory, Brest, France.
Thierry NaasINSERM U 914, Le Kremlin-Bicêtre, France Associated National Reference Center for Antibiotic Resistance, Le Kremlin-Bicêtre, France Faculty of Medicine, South-Paris University, Le Kremlin-Bicêtre, France Bacteriology-Hygiene Unit, Bicêtre Hospital, Assistance Publique/Hôpitaux de Paris, Le Kremlin-Bicêtre, France.
Patrice NordmannINSERM U 914, Le Kremlin-Bicêtre, France Associated National Reference Center for Antibiotic Resistance, Le Kremlin-Bicêtre, France Medical and Microbiology Unit, Department of Medicine, University Fribourg, Fribourg, Switzerland HFR-Hôpital Cantonal, Fribourg, Switzerland patrice.nordmann@unifr.ch.
Inserm · FRCentre Hospitalier Régional Universitaire de Brest · FRCentre Hospitalier Universitaire de Besançon · FRUniversity of Fribourg · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The epidemiology of carbapenemases worldwide is showing that OXA-48 variants are becoming the predominant carbapenemase type in Enterobacteriaceae in many countries. However, not all OXA-48 variants possess significant activity toward carbapenems (e.g., OXA-163). Two Serratia marcescens isolates with resistance either to carbapenems or to extended-spectrum cephalosporins were successively recovered from the same patient. A genomic comparison using pulsed-field gel electrophoresis and automated Rep-PCR typing identified a 97.8% similarity between the two isolates. Both strains were resistant to penicillins and first-generation cephalosporins. The first isolate was susceptible to expanded-spectrum cephalosporins, was resistant to carbapenems, and had a significant carbapenemase activity (positive Carba NP test) related to the expression of OXA-48. The second isolate was resistant to expanded-spectrum cephalosporins, was susceptible to carbapenems, and did not express a significant imipenemase activity, (negative for the Carba NP test) despite possessing a blaOXA-48-type gene. Sequencing identified a novel OXA-48-type β-lactamase, OXA-405, with a four-amino-acid deletion compared to OXA-48. The blaOXA-405 gene was located on a ca. 46-kb plasmid identical to the prototype IncL/M blaOXA-48-carrying plasmid except for a ca. 16.4-kb deletion in the tra operon, leading to the suppression of self-conjugation properties. Biochemical analysis showed that OXA-405 has clavulanic acid-inhibited activity toward expanded-spectrum activity without significant imipenemase activity. This is the first identification of a successive switch of catalytic activity in OXA-48-like β-lactamases, suggesting their plasticity. Therefore, this report suggests that the first-line screening of carbapenemase producers in Enterobacteriaceae may be based on the biochemical detection of carbapenemase activity in clinical settings.

Indexed as

AdultAnti-Bacterial AgentsBacterial ProteinsBase Sequencebeta-LactamasesCarbapenemsCephalosporinsDNA, BacterialDrug Resistance, Multiple, BacterialFemaleHumansMicrobial Sensitivity TestsMolecular Sequence DataPlasmidsSequence Analysis, DNASerratia InfectionsAnti-Bacterial AgentsBacterial Proteinsbeta-lactamase OXA-405, Serratia marcescensbeta-LactamasescarbapenemaseCarbapenemsCephalosporinsDNA, Bacterial

Identifiers

PMID25870062
PMCPMC4468662
OpenAlexW2106678016

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.