Evidence map›Paper›PMID 25869585›Full record

ArticleeLife2015

Response to Nodal morphogen gradient is determined by the kinetics of target gene induction.

Julien Dubrulle, Benjamin M Jordan, Laila Akhmetova, Jeffrey A Farrell, Seok-Hyung Kim, Lilianna Solnica-Krezel, Alexander F Schier

Abstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Optogenetic control of Nodal signaling patterns.Development (Cambridge, England) · 2025
    Article
  10. bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Optogenetic control of Nodal signaling patterns.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Context-dependent TGFβ family signalling in cell fate regulation.Nature reviews. Molecular cell biology · 2023
    Review
  17. Optogenetic Signaling Activation in Zebrafish Embryos.Journal of visualized experiments : JoVE · 2023
    Article
  18. Review
  19. Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Julien DubrulleDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.
Benjamin M JordanDepartment of Mathematics, College of Science and Engineering, University of Minnesota, Minneapolis, United States.
Laila AkhmetovaDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.
Jeffrey A FarrellDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.
Seok-Hyung KimDivision of Medicine, Medical University of South Carolina, Charleston, United States.
Lilianna Solnica-KrezelDepartment of Developmental Biology, Washington University School of Medicine, Saint Louis, United States.
Alexander F SchierDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.

Funding

GENETIC MECHANISMS OF AXIS FORMATION IN VERTEBRATESR01GM056211 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SCHIER, ALEXANDER F · 1997 to 2015
$5.1M
TILLING the Zebrafish Genome: A Reverse Genetic ApproachR01HG002995 · NHGRI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MOENS, CECILIA B, POSTLETHWAIT, JOHN H. · 2003 to 2010
$3.5M
TILLING the Zebrafish Genome: A Reverse Genetics ApproachR01HD076585 · NICHD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MOENS, CECILIA B, SOLNICAKREZEL, LILIANNA · 2012 to 2014
$1.9M
NIGMS NIH HHS R01 GM056211
6 · The paper itself

Abstract

Morphogen gradients expose cells to different signal concentrations and induce target genes with different ranges of expression. To determine how the Nodal morphogen gradient induces distinct gene expression patterns during zebrafish embryogenesis, we measured the activation dynamics of the signal transducer Smad2 and the expression kinetics of long- and short-range target genes. We found that threshold models based on ligand concentration are insufficient to predict the response of target genes. Instead, morphogen interpretation is shaped by the kinetics of target gene induction: the higher the rate of transcription and the earlier the onset of induction, the greater the spatial range of expression. Thus, the timing and magnitude of target gene expression can be used to modulate the range of expression and diversify the response to morphogen gradients.

Indexed as

Transcriptional ActivationAnimalsBody PatterningEndodermFemaleGene Expression Regulation, DevelopmentalGreen Fluorescent ProteinsKineticsMiceModels, BiologicalNodal ProteinSignal TransductionSmad2 ProteinTime FactorsTranscription, GeneticTransgenesGreen Fluorescent ProteinsNodal ProteinSmad2 Proteindevelopmental biologyDNA binding affinitymorphogen gradientsignal transductionstem cellstranscription ratezebrafish

Identifiers

PMID25869585
PMCPMC4395910

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.