Evidence map›Paper›PMID 25869471›Full record

ArticleeLife2015

Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo.

Manon Baëza, Séverine Viala, Marjorie Heim, Amélie Dard, Bruno Hudry, Marilyne Duffraisse, Ana Rogulja-Ortmann, Christine Brun, Samir Merabet

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Homeodomain Involvement in Nuclear HOX Protein Homo- and Heterodimerization.International journal of molecular sciences · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Diversification and Functional Evolution of HOX Proteins.Frontiers in cell and developmental biology · 2022
    Review
  13. HOX Protein Activity Regulation by Cellular Localization.Journal of developmental biology · 2021
    Review
  14. Developmental Robustness: The Haltere Case inFrontiers in cell and developmental biology · 2021
    Article
  15. Roles ofFrontiers in cell and developmental biology · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Manon BaëzaInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
Séverine VialaInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
Marjorie HeimInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
Amélie DardInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
Bruno HudryMRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, United Kingdom.
Marilyne DuffraisseInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
Ana Rogulja-OrtmannInstitut of Genetics, University of Mainz, Mainz, Germany.
Christine BrunTechnological Advances for Genomics and clinics, Institut national de la santé et de la recherche médicale, University Aix-Marseille, Parc Scientifique de Luminy, Marseille, France.ORCID http://orcid.org/0000-0002-5563-6765
Samir MerabetInstitut de génomique fonctionnelle de Lyon, Centre National de Recherche Scientifique, Lyon, France.
École Normale Supérieure de Lyon · FRHammersmith Hospital · GBJohannes Gutenberg University Mainz · DETheories and Approaches of Genomic Complexity · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hox proteins are well-established developmental regulators that coordinate cell fate and morphogenesis throughout embryogenesis. In contrast, our knowledge of their specific molecular modes of action is limited to the interaction with few cofactors. Here, we show that Hox proteins are able to interact with a wide range of transcription factors in the live Drosophila embryo. In this context, specificity relies on a versatile usage of conserved short linear motifs (SLiMs), which, surprisingly, often restrains the interaction potential of Hox proteins. This novel buffering activity of SLiMs was observed in different tissues and found in Hox proteins from cnidarian to mouse species. Although these interactions remain to be analysed in the context of endogenous Hox regulatory activities, our observations challenge the traditional role assigned to SLiMs and provide an alternative concept to explain how Hox interactome specificity could be achieved during the embryonic development.

Indexed as

Protein Interaction MapsAmino Acid MotifsAnimalsBinding, CompetitiveDNADrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianEvolution, MolecularFluorescenceHomeodomain ProteinsIntrinsically Disordered ProteinsMiceMutationOligopeptidesOrgan SpecificityDNADrosophila ProteinsHomeodomain ProteinsIntrinsically Disordered ProteinsOligopeptidesTranscription FactorsBiFCdevelopmentD. melanogasterembryoevolutionary biologygenomicsHoxinteractometranscription factors

Identifiers

PMID25869471
PMCPMC4392834
OpenAlexW2109434173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.