Evidence map›Paper›PMID 25867089›Full record

ArticlePloS one2015

Identification of novel loci associated with gastrointestinal parasite resistance in a Red Maasai x Dorper backcross population.

Magda Vieira Benavides, Tad S Sonstegard, Stephen Kemp, John M Mugambi, John P Gibson, Robert Leyden Baker, Olivier Hanotte, Karen Marshall, Curtis Van Tassell

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
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  17. Variants Within GenesFrontiers in genetics · 2022
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  18. Article
  19. Article
  20. Haemonchosis: A Challenging Parasitic Infection of Sheep and Goats.Animals : an open access journal from MDPI · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 5 countries.

Magda Vieira BenavidesLabEx USA, Embrapa, Brasília, DF, Brazil.
Tad S SonstegardAnimal Genomics & Improvement Laboratory, USDA/ARS/Beltsville Agricultural Research Center, Beltsville, MD, United States of America.
Stephen KempAnimal Biosciences, The International Livestock Research Institute (ILRI), Nairobi, Kenya.
John M MugambiNational Veterinary Research Centre, Kenya Agricultural Research Institute (KARI), Muguga, Kenya.
John P GibsonCentre for Genetic Analysis and Applications, University of New England, Armidale, NSW, Australia.
Robert Leyden BakerWhangamata, Waikato, New Zealand.
Olivier HanotteMedicine & Health Sciences, The University of Nottingham, Nottingham, United Kingdom.
Karen MarshallAnimal Biosciences, The International Livestock Research Institute (ILRI), Nairobi, Kenya.
Curtis Van TassellAnimal Genomics & Improvement Laboratory, USDA/ARS/Beltsville Agricultural Research Center, Beltsville, MD, United States of America.
Beltsville Agricultural Research Center · USInternational Livestock Research Institute · KEBrazilian Agricultural Research Corporation · BRKenya Agricultural Research Institute · KEUniversity of New England · AUUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastrointestinal (GI) parasitic infection is the main health constraint for small ruminant production, causing loss of weight and/or death. Red Maasai sheep have adapted to a tropical environment where extreme parasite exposure is a constant, especially with highly pathogenic Haemonchus contortus. This breed has been reported to be resistant to gastrointestinal parasite infection, hence it is considered an invaluable resource to study associations between host genetics and resistance. The aim of this study was to identify polymorphisms strongly associated with host resistance in a double backcross population derived from Red Maasai and Dorper sheep using a SNP-based GWAS analysis. The animals that were genotyped represented the most resistant and susceptible individuals based on the tails of phenotypic distribution (10% each) for average faecal egg counts (AVFEC). AVFEC, packed cell volume (AVPCV), and live weight (AVLWT) were adjusted for fixed effects and co-variables, and an association analysis was run using EMMAX. Revised significance levels were calculated using 100,000 permutation tests. The top five significant SNP markers with - log10 p-values >3.794 were observed on five different chromosomes for AVFEC, and BLUPPf90/PostGSf90 results confirmed EMMAX significant regions for this trait. One of these regions included a cluster of significant SNP on chromosome (Chr) 6 not in linkage disequilibrium to each other. This genomic location contains annotated genes involved in cytokine signalling, haemostasis and mucus biosynthesis. Only one association detected on Chr 7 was significant for both AVPCV and AVLWT. The results generated here reveal candidate immune variants for genes involved in differential response to infection and provide additional SNP marker information that has potential to aid selection of resistance to gastrointestinal parasites in sheep of a similar genetic background to the double backcross population.

Indexed as

Crosses, GeneticGenetic Predisposition to DiseaseAnimalsChromosome MappingGastrointestinal TractGenome-Wide Association StudyParasite Egg CountPolymorphism, Single NucleotideSheep

Identifiers

PMID25867089
PMCPMC4395112
OpenAlexW1986998390

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.