Evidence map›Paper›PMID 25867014›Full record

ArticleeLife2015

Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness.

Rachel Kerwin, Julie Feusier, Jason Corwin, Matthew Rubin, Catherine Lin, Alise Muok, Brandon Larson, Baohua Li, Bindu Joseph, Marta Francisco and 3 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 161 citations in OpenAlex.

  1. Review
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  9. A large-effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. A persistent major mutation in canonical jasmonate signaling is embedded in an herbivory-elicited gene network.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  19. Genome-wide association mapping within a localPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Rachel KerwinDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Julie FeusierDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Jason CorwinDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Matthew RubinDepartment of Botany, University of Wyoming, Laramie, United States.
Catherine LinDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Alise MuokDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Brandon LarsonDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Baohua LiDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Bindu JosephDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Marta FranciscoDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Daniel CopelandDepartment of Plant Sciences, University of California, Davis, Davis, United States.
Cynthia WeinigDepartment of Genetics, University of Utah, Salt Lake City, United States.
Daniel J KliebensteinDepartment of Plant Sciences, University of California, Davis, Davis, United States.ORCID http://orcid.org/0000-0001-5759-3175
University of California, Davis · USCornell University · USUniversity of Utah · USMisión Biológica de Galicia · ESUniversity of Copenhagen · DKUniversity of Wyoming · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural populations persist in complex environments, where biotic stressors, such as pathogen and insect communities, fluctuate temporally and spatially. These shifting biotic pressures generate heterogeneous selective forces that can maintain standing natural variation within a species. To directly test if genes containing causal variation for the Arabidopsis thaliana defensive compounds, glucosinolates (GSL) control field fitness and are therefore subject to natural selection, we conducted a multi-year field trial using lines that vary in only specific causal genes. Interestingly, we found that variation in these naturally polymorphic GSL genes affected fitness in each of our environments but the pattern fluctuated such that highly fit genotypes in one trial displayed lower fitness in another and that no GSL genotype or genotypes consistently out-performed the others. This was true both across locations and within the same location across years. These results indicate that environmental heterogeneity may contribute to the maintenance of GSL variation observed within Arabidopsis thaliana.

Indexed as

Genes, PlantGenetic FitnessGenetic VariationAllelesArabidopsisEcotypeEnvironmentFlowersGene-Environment InteractionGenetic LociGenetic PleiotropyGlucosinolatesHaplotypesPhenotypePlant LeavesPolymorphism, GeneticGlucosinolatesarabidopsisecologyevolutionary biologyfitnessgenomicsglucosinolatesherbivorynatural variationplant defense

Identifiers

PMID25867014
PMCPMC4396512
OpenAlexW2028088096

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.