Evidence map›Paper›PMID 25866244›Full record

ArticleMolecular cell2015

The basal transcription complex component TAF3 transduces changes in nuclear phosphoinositides into transcriptional output.

Yvette Stijf-Bultsma, Lilly Sommer, Maria Tauber, Mai Baalbaki, Panagiota Giardoglou, David R Jones, Kathy A Gelato, Jason van Pelt, Zahid Shah, Homa Rahnamoun and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. SF-1 Induces Nuclear PIP2.Biomolecules · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. 25 Years of PI5P.Frontiers in cell and developmental biology · 2023
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 4 countries.

Yvette Stijf-BultsmaThe Inositide Laboratory, Centre for Biological Sciences, Highfield Campus, University of Southampton, Southampton SO171BJ, UK; The Inositide Laboratory, the CRUK Manchester Institute, the University of Manchester, Wilmslow Road, Manchester M204BX, UK.
Lilly SommerThe Inositide Laboratory, the CRUK Manchester Institute, the University of Manchester, Wilmslow Road, Manchester M204BX, UK.
Maria TauberLaboratory of Chromatin Biochemistry, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Mai BaalbakiUniversity of California, San Francisco, Mail Code 3120, Smith Cardiovascular Research Building, 555 Mission Bay Boulevard, South San Francisco, CA 94158-9001, USA.
Panagiota GiardoglouInstitute of Biology (IBL), Leiden University, Sylvius Laboratory, Sylviusweg 72, 2333 BE Leiden, the Netherlands.
David R JonesThe Inositide Laboratory, the CRUK Manchester Institute, the University of Manchester, Wilmslow Road, Manchester M204BX, UK.
Kathy A GelatoLaboratory of Chromatin Biochemistry, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Jason van PeltInstitute of Biology (IBL), Leiden University, Sylvius Laboratory, Sylviusweg 72, 2333 BE Leiden, the Netherlands.
Zahid ShahThe Inositide Laboratory, Centre for Biological Sciences, Highfield Campus, University of Southampton, Southampton SO171BJ, UK.
Homa RahnamounDivision of Biological Sciences, Department of Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA.
Clara TomaDivision of Biological Sciences, Department of Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA.
Karen E AndersonSignaling Laboratory, The Babraham Institute, Cambridge, Cambridgeshire CB22 3AT, UK.
Philip HawkinsSignaling Laboratory, The Babraham Institute, Cambridge, Cambridgeshire CB22 3AT, UK.
Shannon M LauberthDivision of Biological Sciences, Department of Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA.
Anna-Pavlina G HaramisInstitute of Biology (IBL), Leiden University, Sylvius Laboratory, Sylviusweg 72, 2333 BE Leiden, the Netherlands.
Daniel HartUniversity of California, San Francisco, Mail Code 3120, Smith Cardiovascular Research Building, 555 Mission Bay Boulevard, South San Francisco, CA 94158-9001, USA.
Wolfgang FischleLaboratory of Chromatin Biochemistry, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Nullin DivechaThe Inositide Laboratory, Centre for Biological Sciences, Highfield Campus, University of Southampton, Southampton SO171BJ, UK; The Inositide Laboratory, the CRUK Manchester Institute, the University of Manchester, Wilmslow Road, Manchester M204BX, UK. Electronic address: n.divecha@soton.ac.uk.
University of Manchester · GBLeiden University · NLMax Planck Institute for Biophysical Chemistry · DEUniversity of California, San Diego · USBabraham Institute · GBMission Bio (United States) · USUniversity of Southampton · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J004456/1
6 · The paper itself

Abstract

Phosphoinositides (PI) are important signaling molecules in the nucleus that influence gene expression. However, if and how nuclear PI directly affects the transcriptional machinery is not known. We report that the lipid kinase PIP4K2B regulates nuclear PI5P and the expression of myogenic genes during myoblast differentiation. A targeted screen for PI interactors identified the PHD finger of TAF3, a TATA box binding protein-associated factor with important roles in transcription regulation, pluripotency, and differentiation. We show that the PI interaction site is distinct from the known H3K4me3 binding region of TAF3 and that PI binding modulates association of TAF3 with H3K4me3 in vitro and with chromatin in vivo. Analysis of TAF3 mutants indicates that TAF3 transduces PIP4K2B-mediated alterations in PI into changes in specific gene transcription. Our study reveals TAF3 as a direct target of nuclear PI and further illustrates the importance of basal transcription components as signal transducers.

Indexed as

Transcription, GeneticAmino Acid SequenceAnimalsCell DifferentiationCell LineCell NucleusElectrophoresis, Polyacrylamide GelGene Expression ProfilingHistonesHomeodomain ProteinsLysineMethylationMiceMinor Histocompatibility AntigensMolecular Sequence DataMutationHistonesHomeodomain ProteinsLysineMinor Histocompatibility Antigensphosphatidylinositol phosphate 4-kinasePhosphatidylinositolsPhosphotransferases (Alcohol Group Acceptor)Taf3 protein, mouseTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID25866244
PMCPMC4429956
OpenAlexW2076828407

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.