Evidence map›Paper›PMID 25865819›Full record

ArticleAddiction biology2016

Polygenic risk for alcohol dependence associates with alcohol consumption, cognitive function and social deprivation in a population-based cohort.

Toni-Kim Clarke, Andrew H Smith, Joel Gelernter, Henry R Kranzler, Lindsay A Farrer, Lynsey S Hall, Ana M Fernandez-Pujals, Donald J MacIntyre, Blair H Smith, Lynne J Hocking and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Addiction biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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  19. Phenome-Wide Association Study for Alcohol and Nicotine Risk Alleles in 26394 Women.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 3 countries.

Toni-Kim ClarkeDivision of Psychiatry.
Andrew H SmithDivision of Human Genetics, Department of Psychiatry, Yale University School of Medicine, VA CT Healthcare Center, West Haven, CT, USA.
Joel GelernterDivision of Human Genetics, Department of Psychiatry, Yale University School of Medicine, VA CT Healthcare Center, West Haven, CT, USA.
Henry R KranzlerDepartment of Psychiatry, University of Pennsylvania Perelman School of Medicine, VISN4 MIRECC, Philadelphia VA Medical Center, Philadelphia, PA, USA.
Lindsay A FarrerDepartments of Medicine, Neurology, Ophthalmology, Biomedical Genetics, Epidemiology, and Biostatistics, Boston University School of Medicine and Public Health, Boston, MA, USA.
Lynsey S HallDivision of Psychiatry.
Ana M Fernandez-PujalsDivision of Psychiatry.
Donald J MacIntyreDivision of Psychiatry.
Blair H SmithPopulation Health Sciences, University of Dundee, UK.
Lynne J HockingDivision of Applied Health Sciences, University of Aberdeen, UK.
Sandosh PadmanabhanInstitute of Cardiovascular and Medical Sciences, University of Glasgow, UK.
Caroline HaywardCentre for Genomics and Experimental Medicine, Institute of Genetics and Molecular Medicine, Western General Hospital, University of Edinburgh, UK.
Pippa A ThomsonCentre for Genomics and Experimental Medicine, Institute of Genetics and Molecular Medicine, Western General Hospital, University of Edinburgh, UK.
David J PorteousMRC Human Genetics, MRC IGMM, University of Edinburgh, UK.
Ian J DearyCentre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, UK.
Andrew M McIntoshDivision of Psychiatry.
University of Edinburgh · GBVA Connecticut Healthcare System · USBoston University · USUniversity of Aberdeen · GBUniversity of Dundee · GBUniversity of Glasgow · GBVA Healthcare-VISN 4 · USWestern General Hospital · GB

Funding

Subject CollectionU10AA008401 · NIAAA · SUNY DOWNSTATE MEDICAL CENTER · PI Sarah Hartz · 1989 to 2026
$162.7M
Translational Technologies CoreP50AA012870 · NIAAA · YALE UNIVERSITY · PI John H. Krystal · 2001 to 2026
$43.7M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI STITZEL, JERRY A · 2001 to 2012
$17.3M
Sex-specific analysis of opioid dependence GWAS and beyondR01DA012690 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2017
$14.0M
GENETICS OF COCAINE DEPENDENCER01DA012849 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1999 to 2010
$11.5M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Linkage Disequilibrium Studies of Alcohol DependenceR01AA011330 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1997 to 2013
$6.4M
Genomewide Association Study of Cocaine Dependence in two PopulationsRC2DA028909 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2009 to 2010
$4.2M
Genetics of Cocaine DependenceR01DA018432 · NIDA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI KRANZLER, HENRY RICHARD · 2006 to 2010
$3.5M
Biotechnology and Biological Sciences Research CouncilChief Scientist Office CZD/16/6/4Medical Research Council G0700704Medical Research Council MC_PC_U127561128Medical Research Council MR/K026992/1NCATS NIH HHS 8UL1TR000142NCATS NIH HHS UL1 TR000142NCI NIH HHS P01 CA089392NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS N01 HG065403NHGRI NIH HHS U01 HG004422NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01 HG004446NHLBI NIH HHS HHSN268200782096CNIAAA NIH HHS P50 AA012870NIAAA NIH HHS P50 AA12870NIAAA NIH HHS R01 AA011330NIAAA NIH HHS R01 AA017535NIAAA NIH HHS R01 AA11330NIAAA NIH HHS U10 AA008401NIDA NIH HHS R01 DA012690NIDA NIH HHS R01 DA012849NIDA NIH HHS R01 DA013423NIDA NIH HHS R01 DA018432NIDA NIH HHS R01 DA12690NIDA NIH HHS R01 DA12849NIDA NIH HHS R01 DA18432NIDA NIH HHS RC2 DA028909NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32GM07205Wellcome Trust 104036Wellcome Trust 104036/Z/14/Z
6 · The paper itself

Abstract

Alcohol dependence is frequently co-morbid with cognitive impairment. The relationship between these traits is complex as cognitive dysfunction may arise as a consequence of heavy drinking or exist prior to the onset of dependence. In the present study, we tested the genetic overlap between cognitive abilities and alcohol dependence using polygenic risk scores (PGRS). We created two independent PGRS derived from two recent genome-wide association studies (GWAS) of alcohol dependence (SAGE GWAS: n = 2750; Yale-Penn GWAS: n = 2377) in a population-based cohort, Generation Scotland: Scottish Family Health Study (GS:SFHS) (n = 9863). Data on alcohol consumption and four tests of cognitive function [Mill Hill Vocabulary (MHV), digit symbol coding, phonemic verbal fluency (VF) and logical memory] were available. PGRS for alcohol dependence were negatively associated with two measures of cognitive function: MHV (SAGE: P = 0.009, β = -0.027; Yale-Penn: P = 0.001, β = -0.034) and VF (SAGE: P = 0.0008, β = -0.036; Yale-Penn: P = 0.00005, β = -0.044). VF remained robustly associated after adjustment for education and social deprivation; however, the association with MHV was substantially attenuated. Shared genetic variants may account for some of the phenotypic association between cognitive ability and alcohol dependence. A significant negative association between PGRS and social deprivation was found (SAGE: P = 5.2 × 10(-7) , β = -0.054; Yale-Penn: P = 0.000012, β = -0.047). Individuals living in socially deprived regions were found to carry more alcohol dependence risk alleles which may contribute to the increased prevalence of problem drinking in regions of deprivation. Future work to identify genes which affect both cognitive impairment and alcohol dependence will help elucidate biological processes common to both disorders.

Indexed as

Alcohol DrinkingAlcoholismCognitionCognition DisordersCohort StudiesEducational StatusFemaleGene FrequencyGenotypeHumansMaleMiddle AgedMultifactorial InheritancePolymorphism, Single NucleotidePrevalenceRisk FactorsAlcohol dependencecognitionenvironmentgeneticspolygenicsocial deprivation

Identifiers

PMID25865819
PMCPMC4600406
OpenAlexW1571771118

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.