ArticlePlant biotechnology journal2016
A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.).
Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
55 citing papers in PubMed, 1 synthesis or guideline pooled it, 121 citations in OpenAlex.
- Conventional and Molecular Breeding Tools for Accelerating Genetic Gain in Faba Bean (Frontiers in plant science · 2021Pooled it
- Faba bean populations already contain the inbreds needed for breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Development of a 10K breeder-friendly SNP chip for faba bean.Frontiers in plant science · 2026Article
- Combining two high-density QTL maps with a reference genome to identify candidate genes for morphology, yield, and biotic resistance in faba bean (Frontiers in plant science · 2026Article
- Combination of QTL mapping and GWAS for fine mapping and gene mining of drought tolerance and seed yield components in faba bean (Vicia faba L.).BMC plant biology · 2025Article
- A panomics-driven framework for the improvement of major food legume crops: advances, challenges, and future prospects.Horticulture research · 2025Article
- Faba Bean: Unlocking nutritional potential and agricultural sustainability.Current research in food science · 2025Review
- A high-density linkage map and fine QTL mapping of architecture, phenology, and yield-related traits in faba bean (Frontiers in plant science · 2025Article
- Identification of Faba bean genetic loci associated with quantitative resistance to the fungusFrontiers in plant science · 2024Article
- Novel SNP markers for flowering and seed quality traits in faba bean (Frontiers in plant science · 2024Article
- Homolog of PeaGenes · 2023Article
- Identifying physiological and genetic determinants of faba bean transpiration response to evaporative demand.Annals of botany · 2023Article
- Article
- Genetic and Metabolite Variability among Commercial Varieties and Advanced Lines ofPlants (Basel, Switzerland) · 2023Article
- Article
- The challenge of breeding for reduced off-flavor in faba bean ingredients.Frontiers in plant science · 2023Review
- Construction of a high-density genetic map for faba bean (Frontiers in plant science · 2023Article
- Genome-wide association analysis for drought tolerance and associated traits in faba bean (Frontiers in plant science · 2023Article
- Transcriptome analysis and characterization of genes associated to leaf tannin content in foxtail millet [Setaria italica (L.) P. Beauv.].BMC genomics · 2022Article
- Genomic regions associated with chocolate spot (Molecular breeding : new strategies in plant improvement · 2022Article
Corrections and comments
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Authors and funding
17 authors at 8 institutions in 6 countries.
Funding
Abstract
Faba bean (Vicia faba L.) is a globally important nitrogen-fixing legume, which is widely grown in a diverse range of environments. In this work, we mine and validate a set of 845 SNPs from the aligned transcriptomes of two contrasting inbred lines. Each V. faba SNP is assigned by BLAST analysis to a single Medicago orthologue. This set of syntenically anchored polymorphisms were then validated as individual KASP assays, classified according to their informativeness and performance on a panel of 37 inbred lines, and the best performing 757 markers used to genotype six mapping populations. The six resulting linkage maps were merged into a single consensus map on which 687 SNPs were placed on six linkage groups, each presumed to correspond to one of the six V. faba chromosomes. This sequence-based consensus map was used to explore synteny with the most closely related crop species, lentil and the most closely related fully sequenced genome, Medicago. Large tracts of uninterrupted colinearity were found between faba bean and Medicago, making it relatively straightforward to predict gene content and order in mapped genetic interval. As a demonstration of this, we mapped a flower colour gene to a 2-cM interval of Vf chromosome 2 which was highly colinear with Mt3. The obvious candidate gene from 78 gene models in the collinear Medicago chromosome segment was the previously characterized MtWD40-1 gene controlling anthocyanin production in Medicago and resequencing of the Vf orthologue showed a putative causative deletion of the entire 5' end of the gene.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.