Evidence map›Paper›PMID 25865367›Full record

ArticleThe New phytologist2015

Integration of genetic and physical maps of the Primula vulgaris S locus and localization by chromosome in situ hybridization.

Jinhong Li, Margaret A Webster, Jonathan Wright, Jonathan M Cocker, Matthew C Smith, Farah Badakshi, Pat Heslop-Harrison, Philip M Gilmartin

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
  7. Supergene evolution via stepwise duplications and neofunctionalization of a floral-organ identity gene.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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  15. Frontiers in plant science · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Jinhong LiSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Margaret A WebsterSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Jonathan WrightThe Genome Analysis Centre, Norwich, Research Park, Norwich, NR4 7UH, UK.
Jonathan M CockerSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Matthew C SmithSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Farah BadakshiDepartment of Biology, University of Leicester, Leicester, LE1 7RH, UK.
Pat Heslop-HarrisonDepartment of Biology, University of Leicester, Leicester, LE1 7RH, UK.
Philip M GilmartinSchool of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
University of East Anglia · GBUniversity of Leicester · GBDurham University · GBEarlham Institute · GBJohn Innes Centre · GBNorwich Research Park · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H019278/1Biotechnology and Biological Sciences Research Council BB/H019278/2
6 · The paper itself

Abstract

Heteromorphic flower development in Primula is controlled by the S locus. The S locus genes, which control anther position, pistil length and pollen size in pin and thrum flowers, have not yet been characterized. We have integrated S-linked genes, marker sequences and mutant phenotypes to create a map of the P. vulgaris S locus region that will facilitate the identification of key S locus genes. We have generated, sequenced and annotated BAC sequences spanning the S locus, and identified its chromosomal location. We have employed a combination of classical genetics and three-point crosses with molecular genetic analysis of recombinants to generate the map. We have characterized this region by Illumina sequencing and bioinformatic analysis, together with chromosome in situ hybridization. We present an integrated genetic and physical map across the P. vulgaris S locus flanked by phenotypic and DNA sequence markers. BAC contigs encompass a 1.5-Mb genomic region with 1 Mb of sequence containing 82 S-linked genes anchored to overlapping BACs. The S locus is located close to the centromere of the largest metacentric chromosome pair. These data will facilitate the identification of the genes that orchestrate heterostyly in Primula and enable evolutionary analyses of the S locus.

Indexed as

Chromosomes, PlantGenes, PlantGenetic LociPhenotypeBase SequenceChromosome MappingChromosomes, Artificial, BacterialContig MappingDNA, PlantEvolution, MolecularFlowersGenetic LinkageGenetic MarkersGenome, PlantIn Situ HybridizationMutationDNA, PlantGenetic Markerschromosome in situgenetic mapheterostylyPrimula vulgarisS locus

Identifiers

PMID25865367
PMCPMC6680154
OpenAlexW2111518505

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.