Evidence map›Paper›PMID 25865119›Full record

ArticleNature communications2015

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.

Annelien Verfaillie, Hana Imrichova, Zeynep Kalender Atak, Michael Dewaele, Florian Rambow, Gert Hulselmans, Valerie Christiaens, Dmitry Svetlichnyy, Flavie Luciani, Laura Van den Mooter and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 265 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
265citing papers in PubMed, 1 pooled it
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

265 citing papers in PubMed, 1 synthesis or guideline pooled it, 544 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Melanoma evolution in the lymph node shapes systemic outcomes.bioRxiv : the preprint server for biology · 2026
    Article
  4. Unique Features of Melanoma Risk and Diagnosis in Red-Haired Populations.International journal of molecular sciences · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. An Itch Receptor Drives Melanoma.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

205 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Annelien VerfaillieLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Hana ImrichovaLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Zeynep Kalender AtakLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Michael Dewaele1] Laboratory for Molecular Cancer Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium [2] VIB Center for the Biology of Disease, 3000 Leuven, Belgium.
Florian Rambow1] Laboratory for Molecular Cancer Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium [2] VIB Center for the Biology of Disease, 3000 Leuven, Belgium.
Gert HulselmansLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Valerie ChristiaensLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Dmitry SvetlichnyyLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Flavie Luciani1] Laboratory for Molecular Cancer Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium [2] VIB Center for the Biology of Disease, 3000 Leuven, Belgium.
Laura Van den Mooter1] VIB Center for the Biology of Disease, 3000 Leuven, Belgium [2] Laboratory of Growth Control and Cancer Research, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Sofie Claerhout1] VIB Center for the Biology of Disease, 3000 Leuven, Belgium [2] Laboratory of Growth Control and Cancer Research, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Mark FiersVIB Center for the Biology of Disease, 3000 Leuven, Belgium.
Fabrice JourneMedical Oncology Clinic, Institut Jules Bordet, Université Libre de Bruxelles, 1000 Brussels, Belgium.
Ghanem-Elias GhanemMedical Oncology Clinic, Institut Jules Bordet, Université Libre de Bruxelles, 1000 Brussels, Belgium.
Carl HerrmannDepartment of Theoretical Bioinformatics, DKFZ Heidelberg, 69117 Heidelberg, Germany.
Georg Halder1] VIB Center for the Biology of Disease, 3000 Leuven, Belgium [2] Laboratory of Growth Control and Cancer Research, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Jean-Christophe Marine1] Laboratory for Molecular Cancer Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium [2] VIB Center for the Biology of Disease, 3000 Leuven, Belgium.
Stein AertsLaboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
KU Leuven · BEVIB-KU Leuven Center for Cancer Biology · BEHeidelberg University · DEInstitut Jules Bordet · BEUniversité Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcriptional reprogramming of proliferative melanoma cells into a phenotypically distinct invasive cell subpopulation is a critical event at the origin of metastatic spreading. Here we generate transcriptome, open chromatin and histone modification maps of melanoma cultures; and integrate this data with existing transcriptome and DNA methylation profiles from tumour biopsies to gain insight into the mechanisms underlying this key reprogramming event. This shows thousands of genomic regulatory regions underlying the proliferative and invasive states, identifying SOX10/MITF and AP-1/TEAD as regulators, respectively. Knockdown of TEADs shows a previously unrecognized role in the invasive gene network and establishes a causative link between these transcription factors, cell invasion and sensitivity to MAPK inhibitors. Using regulatory landscapes and in silico analysis, we show that transcriptional reprogramming underlies the distinct cellular states present in melanoma. Furthermore, it reveals an essential role for the TEADs, linking it to clinically relevant mechanisms such as invasion and resistance.

Indexed as

Gene Expression Regulation, NeoplasticGene Regulatory NetworksTranscriptomeAntineoplastic AgentsCell Line, TumorCell Transformation, NeoplasticCellular ReprogrammingChromatinDNA-Binding ProteinsDNA MethylationHistonesHumansMelanomaMicrophthalmia-Associated Transcription FactorNeoplasm InvasivenessNuclear ProteinsAntineoplastic AgentsChromatinDNA-Binding ProteinsHistonesMicrophthalmia-Associated Transcription FactorMITF protein, humanNuclear ProteinsProtein IsoformsProtein Kinase InhibitorsRNA, Small InterferingSOX10 protein, humanSOXE Transcription FactorsTEAD1 protein, humanTEA Domain Transcription FactorsTranscription Factor AP-1Transcription Factors

Identifiers

PMID25865119
PMCPMC4403341
OpenAlexW2018433132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.