Evidence map›Paper›PMID 25864379›Full record

ArticleAngewandte Chemie (International ed. in English)2015

Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Shay Mailloux, Yulia V Gerasimova, Nataliia Guz, Dmitry M Kolpashchikov, Evgeny Katz

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Catalyst-based biomolecular logic gates.Catalysts (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
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  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shay MaillouxDepartment of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA).
Yulia V GerasimovaChemistry Department, University of Central Florida, 4000 Central Florida Boulevard, Orlando, FL 32816-2366 (USA).
Nataliia GuzDepartment of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA).
Dmitry M KolpashchikovChemistry Department, University of Central Florida, 4000 Central Florida Boulevard, Orlando, FL 32816-2366 (USA). Dmitry.Kolpashchikov@ucf.edu.
Evgeny KatzDepartment of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA). ekatz@clarkson.edu.

Funding

Deoxyribozyme sensor-based diagnostics for Mycobacterium tuberculosisR15AI103880 · NIAID · UNIVERSITY OF CENTRAL FLORIDA · PI KOLPASHCHIKOV, DMITRY MIKHAYLOVICH · 2013 to 2013
$430k
NIAID NIH HHS R15 AI103880
6 · The paper itself

Abstract

Molecular computing based on enzymes or nucleic acids has attracted a great deal of attention due to the perspectives of controlling living systems in the way we control electronic computers. Enzyme-based computational systems can respond to a great variety of small molecule inputs. They have the advantage of signal amplification and highly specific recognition. DNA computing systems are most often controlled by oligonucleotide inputs/outputs and are capable of sophisticated computing as well as controlling gene expressions. Here, we developed an interface that enables communication of otherwise incompatible nucleic-acid and enzyme-computational systems. The enzymatic system processes small molecules as inputs and produces NADH as an output. The NADH output triggers electrochemical release of an oligonucleotide, which is accepted by a DNA computational system as an input. This interface is universal because the enzymatic and DNA computing systems are independent of each other in composition and complexity.

Indexed as

DNAElectrochemical TechniquesElectrodesEnzymesEnzymes, ImmobilizedNADOligonucleotidesPolyethyleneiminePQQ CofactorDNAEnzymesEnzymes, ImmobilizedNADOligonucleotidesPolyethyleneiminePQQ Cofactordeoxyribozymeselectrochemistryenzyme computationmolecular computationNADH

Identifiers

PMID25864379
PMCPMC4495919

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.