Evidence map›Paper›PMID 25862242›Full record

ArticleRNA (New York, N.Y.)2015

oskar RNA plays multiple noncoding roles to support oogenesis and maintain integrity of the germline/soma distinction.

Matt Kanke, Helena Jambor, John Reich, Brittany Marches, Ronald Gstir, Young Hee Ryu, Anne Ephrussi, Paul M Macdonald

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Review
  7. Regulation of insect behavior by non-coding RNAs.Science China. Life sciences · 2024
    Review
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  9. Cup is essential forRNA biology · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. CompartmentalizedeLife · 2020
    Article
  18. Coordinating Proliferation, Polarity, and Cell Fate in theFrontiers in cell and developmental biology · 2020
    Review
  19. Article
  20. MultipleJournal of cell science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Matt KankeDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA.
Helena JamborDevelopmental Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
John ReichDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA.
Brittany MarchesDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA.
Ronald GstirDevelopmental Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Young Hee RyuDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA.
Anne EphrussiDevelopmental Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Paul M MacdonaldDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712, USA.
The University of Texas at Austin · USEuropean Molecular Biology Laboratory · DE

Funding

REGULATED MRNA TRANSLATION IN DROSOPHILA BODY PATTERNINGR01GM054409 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MACDONALD, PAUL M. · 1995 to 2010
$2.1M
Translational control by cis elements acting in transR01GM096730 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MACDONALD, PAUL M. · 2011 to 2014
$962k
NIGMS NIH HHS GM054409NIGMS NIH HHS GM096730NIGMS NIH HHS R01 GM054409NIGMS NIH HHS R01 GM096730
6 · The paper itself

Abstract

The Drosophila oskar (osk) mRNA is unusual in that it has both coding and noncoding functions. As an mRNA, osk encodes a protein required for embryonic patterning and germ cell formation. Independent of that function, the absence of osk mRNA disrupts formation of the karyosome and blocks progression through oogenesis. Here we show that loss of osk mRNA also affects the distribution of regulatory proteins, relaxing their association with large RNPs within the germline, and allowing them to accumulate in the somatic follicle cells. This and other noncoding functions of the osk mRNA are mediated by multiple sequence elements with distinct roles. One role, provided by numerous binding sites in two distinct regions of the osk 3' UTR, is to sequester the translational regulator Bruno (Bru), which itself controls translation of osk mRNA. This defines a novel regulatory circuit, with Bru restricting the activity of osk, and osk in turn restricting the activity of Bru. Other functional elements, which do not bind Bru and are positioned close to the 3' end of the RNA, act in the oocyte and are essential. Despite the different roles played by the different types of elements contributing to RNA function, mutation of any leads to accumulation of the germline regulatory factors in the follicle cells.

Indexed as

Oogenesis3' Untranslated RegionsAnimalsBinding SitesDrosophila melanogasterDrosophila ProteinsFemaleGene Expression RegulationMutationOvumRegulatory Elements, TranscriptionalRNA-Binding ProteinsRNA, Messenger3' Untranslated Regionsbru1 protein, DrosophilaDrosophila Proteinsosk protein, DrosophilaRNA-Binding ProteinsRNA, MessengerBrunolncRNA functionoskarprotein sequestration

Identifiers

PMID25862242
PMCPMC4436663
OpenAlexW2132175590

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.