Evidence map›Paper›PMID 25862231›Full record

ArticleApplied and environmental microbiology2015

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

Ping Zhang, Wei-Min Wu, Joy D Van Nostrand, Ye Deng, Zhili He, Thomas Gihring, Gengxin Zhang, Chris W Schadt, David Watson, Phil Jardine and 6 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Effects of exogenous elevation of corticosterone on immunity and the skin microbiome of eastern newts (Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Metagenomic applications in environmental monitoring and bioremediation.Journal of industrial microbiology & biotechnology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ping ZhangInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA.
Wei-Min WuDepartment of Civil and Environmental Engineering, Stanford University, Stanford, California, USA.
Joy D Van NostrandInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA.
Ye DengInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA.
Zhili HeInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA.
Thomas GihringEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Gengxin ZhangEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Chris W SchadtEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
David WatsonEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Phil JardineEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Craig S CriddleDepartment of Civil and Environmental Engineering, Stanford University, Stanford, California, USA.
Scott BrooksEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Terence L MarshCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA.
James M TiedjeCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA.
Adam P ArkinPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Jizhong ZhouInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China jzhou@ou.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A pilot-scale field experiment demonstrated that a one-time amendment of emulsified vegetable oil (EVO) reduced groundwater U(VI) concentrations for 1 year in a fast-flowing aquifer. However, little is known about how EVO amendment stimulates the functional gene composition, structure, and dynamics of groundwater microbial communities toward prolonged U(VI) reduction. In this study, we hypothesized that EVO amendment would shift the functional gene composition and structure of groundwater microbial communities and stimulate key functional genes/groups involved in EVO biodegradation and reduction of electron acceptors in the aquifer. To test these hypotheses, groundwater microbial communities after EVO amendment were analyzed using a comprehensive functional gene microarray. Our results showed that EVO amendment stimulated sequential shifts in the functional composition and structure of groundwater microbial communities. Particularly, the relative abundance of key functional genes/groups involved in EVO biodegradation and the reduction of NO3 (-), Mn(IV), Fe(III), U(VI), and SO4 (2-) significantly increased, especially during the active U(VI) reduction period. The relative abundance for some of these key functional genes/groups remained elevated over 9 months. Montel tests suggested that the dynamics in the abundance, composition, and structure of these key functional genes/groups were significantly correlated with groundwater concentrations of acetate, NO3 (-), Mn(II), Fe(II), U(VI), and SO4 (2-). Our results suggest that EVO amendment stimulated dynamic succession of key functional microbial communities. This study improves our understanding of the composition, structure, and function changes needed for groundwater microbial communities to sustain a long-term U(VI) reduction.

Indexed as

Biodegradation, EnvironmentalAcetatesEmulsionsGroundwaterMicroarray AnalysisMicrobial ConsortiaPlant OilsSulfatesTime FactorsUraniumWater Pollutants, RadioactiveAcetatesEmulsionsPlant OilsSulfatesUraniumWater Pollutants, Radioactive

Identifiers

PMID25862231
PMCPMC4524159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.