Evidence map›Paper›PMID 25862227›Full record

ArticleApplied and environmental microbiology2015

Resistance Genes and Genetic Elements Associated with Antibiotic Resistance in Clinical and Commensal Isolates of Streptococcus salivarius.

Fanny Chaffanel, Florence Charron-Bourgoin, Virginie Libante, Nathalie Leblond-Bourget, Sophie Payot

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Fanny ChaffanelINRA, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France; Université de Lorraine, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France.
Florence Charron-BourgoinINRA, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France; Université de Lorraine, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France.
Virginie LibanteINRA, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France; Université de Lorraine, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France.
Nathalie Leblond-BourgetINRA, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France; Université de Lorraine, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France.
Sophie PayotINRA, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France; Université de Lorraine, UMR1128 DynAMic, Faculté des Sciences et Technologies, Vandœuvre-lès-Nancy, France payot@nancy.inra.fr.
Université de Lorraine · FRDynamique des Génomes et Adaptation Microbienne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diversity of clinical (n = 92) and oral and digestive commensal (n = 120) isolates of Streptococcus salivarius was analyzed by multilocus sequence typing (MLST). No clustering of clinical or commensal strains can be observed in the phylogenetic tree. Selected strains (92 clinical and 46 commensal strains) were then examined for their susceptibilities to tetracyclines, macrolides, lincosamides, aminoglycosides, and phenicol antibiotics. The presence of resistance genes tet(M), tet(O), erm(A), erm(B), mef(A/E), and catQ and associated genetic elements was investigated by PCR, as was the genetic linkage of resistance genes. High rates of erythromycin and tetracycline resistance were observed among the strains. Clinical strains displayed either the erm(B) (macrolide-lincosamide-streptogramin B [MLSB] phenotype) or mef(A/E) (M phenotype) resistance determinant, whereas almost all the commensal strains harbored the mef(A/E) resistance gene, carried by a macrolide efflux genetic assembly (MEGA) element. A genetic linkage between a macrolide resistance gene and genes of Tn916 was detected in 23 clinical strains and 5 commensal strains, with a predominance of Tn3872 elements (n = 13), followed by Tn6002 (n = 11) and Tn2009 (n = 4) elements. Four strains harboring a mef(A/E) gene were also resistant to chloramphenicol and carried a catQ gene. Sequencing of the genome of one of these strains revealed that these genes colocalized on an IQ-like element, as already described for other viridans group streptococci. ICESt3-related elements were also detected in half of the isolates. This work highlights the potential role of S. salivarius in the spread of antibiotic resistance genes both in the oral sphere and in the gut.

Indexed as

Drug Resistance, BacterialInterspersed Repetitive SequencesAdultAnti-Bacterial AgentsChild, PreschoolChromosome MappingFecesGenetic LinkageHealthy VolunteersHumansInfantLincosamidesMacrolidesMicrobial Sensitivity TestsMultilocus Sequence TypingPhylogenyAnti-Bacterial AgentsLincosamidesMacrolides

Identifiers

PMID25862227
PMCPMC4524163
OpenAlexW2100792760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.