Evidence map›Paper›PMID 25862224›Full record

ArticleApplied and environmental microbiology2015

Steroid hydroxylation by basidiomycete peroxygenases: a combined experimental and computational study.

Esteban D Babot, José C Del Río, Marina Cañellas, Ferran Sancho, Fátima Lucas, Víctor Guallar, Lisbeth Kalum, Henrik Lund, Glenn Gröbe, Katrin Scheibner and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Highly selective whole-cell 25-hydroxyvitamin DMicrobial cell factories · 2024
    Article
  3. Review
  4. Article
  5. Vesicle-based cell-free synthesis of short and long unspecific peroxygenases.Frontiers in bioengineering and biotechnology · 2022
    Article
  6. Article
  7. Pilot-Scale Production of Peroxygenase fromOrganic process research & development · 2021
    Review
  8. Article
  9. Article
  10. Fatty Acid Chain Shortening by a Fungal Peroxygenase.Chemistry (Weinheim an der Bergstrasse, Germany) · 2017
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Esteban D BabotInstituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain.
José C Del RíoInstituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain.
Marina CañellasJoint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain Anaxomics Biotech, Barcelona, Spain.
Ferran SanchoJoint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain Anaxomics Biotech, Barcelona, Spain.
Fátima LucasJoint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain.
Víctor GuallarJoint BSC-CRG-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain ICREA, Barcelona, Spain.
Lisbeth KalumNovozymes A/S, Bagsvaerd, Denmark.
Henrik LundNovozymes A/S, Bagsvaerd, Denmark.
Glenn GröbeJenaBios GmbH, Jena, Germany.
Katrin ScheibnerJenaBios GmbH, Jena, Germany.
René UllrichTU Dresden, Department of Bio- and Environmental Sciences, Zittau, Germany.
Martin HofrichterTU Dresden, Department of Bio- and Environmental Sciences, Zittau, Germany.
Angel T MartínezCentro de Investigaciones Biológicas, CSIC, Madrid, Spain.
Ana GutiérrezInstituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain anagu@irnase.csic.es.
Instituto de Recursos Naturales y Agrobiología de Sevilla · ESAnaxomics (Spain) · ESJena Bioscience (Germany) · DENovozymes (Denmark) · DKTU Dresden · DEBarcelona Supercomputing Center · ESCentro de Investigaciones Biológicas Margarita Salas · ESUniversitat Politècnica de Catalunya · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The goal of this study is the selective oxyfunctionalization of steroids under mild and environmentally friendly conditions using fungal enzymes. With this purpose, peroxygenases from three basidiomycete species were tested for the hydroxylation of a variety of steroidal compounds, using H2O2 as the only cosubstrate. Two of them are wild-type enzymes from Agrocybe aegerita and Marasmius rotula, and the third one is a recombinant enzyme from Coprinopsis cinerea. The enzymatic reactions on free and esterified sterols, steroid hydrocarbons, and ketones were monitored by gas chromatography, and the products were identified by mass spectrometry. Hydroxylation at the side chain over the steroidal rings was preferred, with the 25-hydroxyderivatives predominating. Interestingly, antiviral and other biological activities of 25-hydroxycholesterol have been reported recently (M. Blanc et al., Immunity 38:106-118, 2013, http://dx.doi.org/10.1016/j.immuni.2012.11.004). However, hydroxylation in the ring moiety and terminal hydroxylation at the side chain also was observed in some steroids, the former favored by the absence of oxygenated groups at C-3 and by the presence of conjugated double bonds in the rings. To understand the yield and selectivity differences between the different steroids, a computational study was performed using Protein Energy Landscape Exploration (PELE) software for dynamic ligand diffusion. These simulations showed that the active-site geometry and hydrophobicity favors the entrance of the steroid side chain, while the entrance of the ring is energetically penalized. Also, a direct correlation between the conversion rate and the side chain entrance ratio could be established that explains the various reaction yields observed.

Indexed as

AgaricalesChromatography, GasComputer SimulationHydrogen PeroxideHydroxylationKetonesMarasmiusMass SpectrometryMixed Function OxygenasesStereoisomerismSteroidsHydrogen PeroxideKetonesMixed Function OxygenasesperoxygenaseSteroids

Identifiers

PMID25862224
PMCPMC4524154
OpenAlexW2045011673

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.