Evidence map›Paper›PMID 25862223›Full record

ArticleApplied and environmental microbiology2015

Functional Characterization of Corynebacterium alkanolyticum β-Xylosidase and Xyloside ABC Transporter in Corynebacterium glutamicum.

Akira Watanabe, Kazumi Hiraga, Masako Suda, Hideaki Yukawa, Masayuki Inui

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Akira WatanabeResearch Institute of Innovative Technology for the Earth, Kizugawa-shi, Kyoto, Japan.
Kazumi HiragaResearch Institute of Innovative Technology for the Earth, Kizugawa-shi, Kyoto, Japan.
Masako SudaResearch Institute of Innovative Technology for the Earth, Kizugawa-shi, Kyoto, Japan.
Hideaki YukawaResearch Institute of Innovative Technology for the Earth, Kizugawa-shi, Kyoto, Japan.
Masayuki InuiResearch Institute of Innovative Technology for the Earth, Kizugawa-shi, Kyoto, Japan Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan mmg-lab@rite.or.jp.
Research Institute of Innovative Technology for the Earth · JPNara Institute of Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Corynebacterium alkanolyticum xylEFGD gene cluster comprises the xylD gene that encodes an intracellular β-xylosidase next to the xylEFG operon encoding a substrate-binding protein and two membrane permease proteins of a xyloside ABC transporter. Cloning of the cluster revealed a recombinant β-xylosidase of moderately high activity (turnover for p-nitrophenyl-β-d-xylopyranoside of 111 ± 4 s(-1)), weak α-l-arabinofuranosidase activity (turnover for p-nitrophenyl-α-l-arabinofuranoside of 5 ± 1 s(-1)), and high tolerance to product inhibition (Ki for xylose of 67.6 ± 2.6 mM). Heterologous expression of the entire cluster under the control of the strong constitutive tac promoter in the Corynebacterium glutamicum xylose-fermenting strain X1 enabled the resultant strain X1EFGD to rapidly utilize not only xylooligosaccharides but also arabino-xylooligosaccharides. The ability to utilize arabino-xylooligosaccharides depended on cgR_2369, a gene encoding a multitask ATP-binding protein. Heterologous expression of the contiguous xylD gene in strain X1 led to strain X1D with 10-fold greater β-xylosidase activity than strain X1EFGD, albeit with a total loss of arabino-xylooligosaccharide utilization ability and only half the ability to utilize xylooligosaccharides. The findings suggest some inherent ability of C. glutamicum to take up xylooligosaccharides, an ability that is enhanced by in the presence of a functional xylEFG-encoded xyloside ABC transporter. The finding that xylEFG imparts nonnative ability to take up arabino-xylooligosaccharides should be useful in constructing industrial strains with efficient fermentation of arabinoxylan, a major component of lignocellulosic biomass hydrolysates.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersBacterial ProteinsCarrier ProteinsCloning, MolecularCorynebacteriumCorynebacterium glutamicumFermentationGlucuronatesGlycoside HydrolasesGlycosidesKineticsMolecular Sequence DataMultigene FamilyOligosaccharidesOperonalpha-N-arabinofuranosidasearabinoxylanATP-Binding Cassette TransportersATP-binding protein, bacteriaBacterial ProteinsCarrier Proteinsexo-1,4-beta-D-xylosidaseGlucuronatesGlycoside HydrolasesGlycosidesOligosaccharidesXylansxylooligosaccharideXyloseXylosidasesxylosides

Identifiers

PMID25862223
PMCPMC4524156
OpenAlexW2057597012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.