Evidence map›Paper›PMID 25862154›Full record

ArticleEukaryotic cell2015

Overlapping Functions between SWR1 Deletion and H3K56 Acetylation in Candida albicans.

Zhiyun Guan, Haoping Liu

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Protein lysine acetylation regulates oral microorganisms.Frontiers in cellular and infection microbiology · 2025
    Review
  2. Review
  3. Fun30 nucleosome remodeller regulates white-to-opaque switching inActa biochimica et biophysica Sinica · 2023
    Article
  4. Article
  5. Effects of Hst3p inhibition inFrontiers in cellular and infection microbiology · 2022
    Article
  6. On and Off: Epigenetic Regulation ofPathogens (Basel, Switzerland) · 2021
    Review
  7. The Roles of Chromatin Accessibility in Regulating theJournal of fungi (Basel, Switzerland) · 2021
    Review
  8. Chromatin Structure and Drug Resistance inJournal of fungi (Basel, Switzerland) · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Zhiyun GuanDepartment of Biological Chemistry, University of California, Irvine, Irvine, California, USA.
Haoping LiuDepartment of Biological Chemistry, University of California, Irvine, Irvine, California, USA h4liu@uci.edu.
University of California, Irvine · US

Funding

Biomedical Informatics Training ProgramT15LM007443 · NLM · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALDI, PIERRE · 2002 to 2012
$9.3M
REGULATION OF FILAMENTOUS GROWTH IN YEASTR01GM055155 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LIU, HAOPING · 1997 to 2013
$4.1M
Dissecting triazole resistance and transcriptional regulation of ergosterol homeoR01AI099190 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI LIU, HAOPING · 2012 to 2016
$3.1M
NIAID NIH HHS R01 AI099190NIAID NIH HHS R01AI099190NIAID NIH HHS R01GM/AI55155NIGMS NIH HHS R01 GM055155NLM NIH HHS 5T15LM007443NLM NIH HHS T15 LM007443
6 · The paper itself

Abstract

Nucleosome destabilization by histone variants and modifications has been implicated in the epigenetic regulation of gene expression, with the histone variant H2A.Z and acetylation of H3K56 (H3K56ac) being two examples. Here we find that deletion of SWR1, the major subunit of the SWR1 complex depositing H2A.Z into chromatin in exchange for H2A, promotes epigenetic white-opaque switching in Candida albicans. We demonstrate through nucleosome mapping that SWR1 is required for proper nucleosome positioning on the promoter of WOR1, the master regulator of switching, and that its effects differ in white and opaque cells. Furthermore, we find that H2A.Z is enriched adjacent to nucleosome-free regions at the WOR1 promoter in white cells, suggesting a role in the stabilization of a repressive chromatin state. Deletion of YNG2, a subunit of the NuA4 H4 histone acetyltransferase (HAT) that targets SWR1 activity through histone acetylation, produces a switching phenotype similar to that of swr1, and both may act downstream of the GlcNAc signaling pathway. We further uncovered a genetic interaction between swr1 and elevated H3K56ac with the discovery that the swr1 deletion mutant is highly sensitive to nicotinamide. Our results suggest that the interaction of H2A.Z and H3K56ac regulates epigenetic switching at the nucleosome level, as well as having global effects.

Indexed as

Protein Processing, Post-TranslationalAcetylationCandida albicansChromatin Assembly and DisassemblyFungal ProteinsGene DeletionGene Expression Regulation, FungalHistone AcetyltransferasesHistonesNucleosomesRNA HelicasesFungal ProteinsHistone AcetyltransferasesHistonesNucleosomesRNA Helicases

Identifiers

PMID25862154
PMCPMC4452568
OpenAlexW2164471719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.