Evidence map›Paper›PMID 25862080›Full record

ArticleAnalytical biochemistry2015

Z-scan fluorescence profile deconvolution of cytosolic and membrane-associated protein populations.

Elizabeth M Smith, Jared Hennen, Yan Chen, Joachim D Mueller

Abstract read
In one paragraph

Article in Analytical biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Elizabeth M SmithSchool of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455, USA.
Jared HennenSchool of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455, USA.
Yan ChenSchool of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455, USA; Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.
Joachim D MuellerSchool of Physics and Astronomy, University of Minnesota, Minneapolis, MN 55455, USA; Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA; Department of Biomedical Engineering, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address: mueller@physics.umn.edu.
University of Minnesota · US

Funding

In vivo Fluorescence Fluctuation Spectroscopy - Administrative SupplementR01GM064589 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUELLER, JOACHIM D · 2002 to 2019
$4.6M
Minnesota Training Program in VirologyT32AI083196 · NIAID · UNIVERSITY OF MINNESOTA · PI Louis M Mansky · 2010 to 2026
$3.2M
HTLV-1 Particle Analysis and Gag InteractionsR01GM098550 · NIGMS · UNIVERSITY OF MINNESOTA · PI MANSKY, LOUIS M. · 2012 to 2020
$3.1M
NIAID NIH HHS T32 AI083196NIGMS NIH HHS GM098550NIGMS NIH HHS R01 GM064589NIGMS NIH HHS R01 GM098550PHS HHS 5T32A1083196
6 · The paper itself

Abstract

This study introduces a technique that characterizes the spatial distribution of peripheral membrane proteins that associate reversibly with the plasma membrane. An axial scan through the cell generates a z-scan intensity profile of a fluorescently labeled peripheral membrane protein. This profile is analytically separated into membrane and cytoplasmic components by accounting for both the cell geometry and the point spread function. We experimentally validated the technique and characterized both the resolvability and stability of z-scan measurements. Furthermore, using the cellular brightness of green fluorescent protein, we were able to convert the fluorescence intensities into concentrations at the membrane and in the cytoplasm. We applied the technique to study the translocation of the pleckstrin homology domain of phospholipase C delta 1 labeled with green fluorescent protein on ionomycin treatment. Analysis of the z-scan fluorescence profiles revealed protein-specific cell height changes and allowed for comparison between the observed fluorescence changes and predictions based on the cellular surface area-to-volume ratio. The quantitative capability of z-scan fluorescence profile deconvolution offers opportunities for investigating peripheral membrane proteins in the living cell that were previously not accessible.

Indexed as

FluorescenceCell LineCell MembraneCytosolGreen Fluorescent ProteinsHumansMembrane ProteinsPhospholipase C deltaGreen Fluorescent ProteinsMembrane ProteinsPhospholipase C deltaPLCD1 protein, humanBrightnessPeripheral membrane proteinPhospholipase CPleckstrin homology domainPoint spread functionTranslocation

Identifiers

PMID25862080
PMCPMC4438313
OpenAlexW1993184461

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.