Evidence map›Paper›PMID 25861986›Full record

ArticleThe Journal of biological chemistry2015

Two Isoforms of the RNA Binding Protein, Coding Region Determinant-binding Protein (CRD-BP/IGF2BP1), Are Expressed in Breast Epithelium and Support Clonogenic Growth of Breast Tumor Cells.

Saja A Fakhraldeen, Rod J Clark, Avtar Roopra, Emily N Chin, Wei Huang, John Castorino, Kari B Wisinski, TaeWon Kim, Vladimir S Spiegelman, Caroline M Alexander

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  10. N6-Methyladenosine Methylation of mRNA in Cell Senescence.Cellular and molecular neurobiology · 2023
    Review
  11. Review
  12. Article
  13. Review
  14. Tagged actin mRNA dysregulation in IGF2BP1[Formula: see text] mice.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Saja A FakhraldeenFrom the McArdle Laboratory for Cancer Research and.
Rod J ClarkFrom the McArdle Laboratory for Cancer Research and.
Avtar Rooprathe Departments of Neuroscience.
Emily N ChinFrom the McArdle Laboratory for Cancer Research and.
Wei HuangPathology and Laboratory Medicine.
John Castorinothe School of Natural Sciences, Hampshire College, Amherst, Massachusetts 01002.
Kari B WisinskiMedicine, and.
TaeWon KimDermatology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin 53705-2276 and.
Vladimir S SpiegelmanDermatology, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, Wisconsin 53705-2276 and.
Caroline M AlexanderFrom the McArdle Laboratory for Cancer Research and alexander@oncology.wisc.edu.
Center for Cancer Research · USUniversity of Wisconsin–Madison · USHampshire College · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Christian Capitini · 1985 to 2026
$142.6M
Training in Cancer Biology Training GrantT32CA009135 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI SUGDEN, WILLIAM M. · 1985 to 2024
$10.4M
RNA-binding protein CRD-BP in melanocyte biologyR01AR063361 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI SPIEGELMAN, VLADIMIR S. · 2013 to 2017
$1.6M
NCI NIH HHS 2P30CA014520-39NCI NIH HHS P30 CA014520NCI NIH HHS T32 CA009135NIAMS NIH HHS AR063361NIAMS NIH HHS R01 AR063361
6 · The paper itself

Abstract

CRD-BP/IGF2BP1 has been characterized as an "oncofetal" RNA binding protein typically highly expressed in embryonic tissues, suppressed in normal adult tissues, but induced in many tumor types. In this study, we show that adult breast tissues express ubiquitous but low levels of CRD-BP protein and mRNA. Although CRD-BP mRNA expression is induced in breast tumor cells, levels remain ∼1000-fold lower than in embryonic tissues. Despite low expression levels, CRD-BP is required for clonogenic growth of breast cancer cells. We reveal that because the most common protein isoform in normal adult breast and breast tumors has an N-terminal deletion (lacking two RNA recognition motif (RRM) domains) and is therefore missing antibody epitopes, CRD-BP expression has been under-reported by previous studies. We show that a CRD-BP mutant mouse strain retains expression of the shorter transcript (ΔN-CRD-BP), which originates in intron 2, suggesting that the impact of complete ablation of this gene in mice is not yet known. Either the full-length CRD-BP or the N-terminally truncated version can rescue the clonogenicity of CRD-BP knockdown breast cancer cells, suggesting that clonogenic function is served by either CRD-BP isoform. In summary, although CRD-BP expression levels are low in breast cancer cells, this protein is necessary for clonogenic activity.

Indexed as

Cell ProliferationAdultAnimalsApoptosisBlotting, WesternBreastBreast NeoplasmsCells, CulturedEmbryo, MammalianFemaleFibroblastsFluorescent Antibody TechniqueHumansImmunoenzyme TechniquesMiceMiddle AgedCRD-BP protein, mouseIGF2BP1 protein, humanProtein IsoformsRNA-Binding ProteinsRNA, Messengeralternate transcription sitebreast cancerclonogenicityIMP1mammary glandmRNAmultifunctional proteinRNA binding proteinRNA metabolismRNA-protein interaction

Identifiers

PMID25861986
PMCPMC4505587
OpenAlexW2035795167

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.