Evidence map›Paper›PMID 25861383›Full record

ArticleEvolutionary applications2015

Role of pleiotropy during adaptation of TEM-1 β-lactamase to two novel antibiotics.

Martijn F Schenk, Sariette Witte, Merijn L M Salverda, Bertha Koopmanschap, Joachim Krug, J Arjan G M de Visser

Open access · goldAbstract read
In one paragraph

Article in Evolutionary applications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  7. Review
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  11. Adaptive benefits from small mutation supplies in an antibiotic resistance enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. How mutational epistasis impairs predictability in protein evolution and design.Protein science : a publication of the Protein Society · 2016
    Article
  16. Review
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  18. Article
  19. Article
  20. Breaking evolutionary constraint with a tradeoff ratchet.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Martijn F SchenkInstitute of Genetics, University of Cologne Köln, Germany ; Laboratory of Genetics, Wageningen University Wageningen, The Netherlands.
Sariette WitteLaboratory of Genetics, Wageningen University Wageningen, The Netherlands.
Merijn L M SalverdaLaboratory of Genetics, Wageningen University Wageningen, The Netherlands.
Bertha KoopmanschapLaboratory of Genetics, Wageningen University Wageningen, The Netherlands.
Joachim KrugInstitute for Theoretical Physics, University of Cologne Köln, Germany ; Systems Biology of Ageing Cologne (Sybacol), University of Cologne Köln, Germany.
J Arjan G M de VisserLaboratory of Genetics, Wageningen University Wageningen, The Netherlands.
Wageningen University & Research · NLUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pleiotropy is a key feature of the genotype-phenotype map, and its form and extent have many evolutionary implications, including for the dynamics of adaptation and the evolution of specialization. Similarly, pleiotropic effects of antibiotic resistance mutations may affect the evolution of antibiotic resistance in the simultaneous or fluctuating presence of different antibiotics. Here, we study the role of pleiotropy during the in vitro adaptation of the enzyme TEM-1 β-lactamase to two novel antibiotics, cefotaxime (CTX) and ceftazidime (CAZ). We subject replicate lines for four rounds of evolution to selection with CTX and CAZ alone, and in their combined and fluctuating presence. Evolved alleles show positive correlated responses when selecting with single antibiotics. Nevertheless, pleiotropic constraints are apparent from the effects of single mutations and from selected alleles showing smaller correlated than direct responses and smaller responses after simultaneous and fluctuating selection with both than with single antibiotics. We speculate that these constraints result from structural changes in the oxyanion pocket surrounding the active site, where accommodation of CTX and the larger CAZ is balanced against their positioning with respect to the active site. Our findings suggest limited benefits from the combined or fluctuating application of these related cephalosporins for containing antibiotic resistance.

Indexed as

antibiotic resistanceepistasispleiotropyprotein evolutionTEM-1 β-lactamasetrade-off

Identifiers

PMID25861383
PMCPMC4380919
OpenAlexW1978306704

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.