Evidence map›Paper›PMID 25858952›Full record

ArticleGenome research2015

New signaling pathways govern the host response to C. albicans infection in various niches.

Yaoping Liu, Amol C Shetty, Jennifer A Schwartz, L Latey Bradford, Wenjie Xu, Qyunh T Phan, Priti Kumari, Anup Mahurkar, Aaron P Mitchell, Jacques Ravel and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 89 citations in OpenAlex.

  1. Review
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  11. A New Phenotype inmBio · 2023
    Article
  12. bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Review
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  17. Article
  18. Article
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Yaoping LiuDivision of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California 90509, USA;
Amol C ShettyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Jennifer A SchwartzInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
L Latey BradfordInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Wenjie XuDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA;
Qyunh T PhanDivision of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California 90509, USA; David Geffen School of Medicine at UCLA, Torrance, California 90509, USA.
Priti KumariInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Anup MahurkarInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Aaron P MitchellDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA;
Jacques RavelInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Claire M FraserInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
Scott G FillerDivision of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California 90509, USA; David Geffen School of Medicine at UCLA, Torrance, California 90509, USA.
Vincent M BrunoInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;
University of Maryland, Baltimore · USThe Lundquist Institute · USCarnegie Mellon University · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Technology CoreU19AI110820 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI DUNNING HOTOPP, JULIE · 2014 to 2023
$36.5M
EXPAND PARTICIPATION BY MINORITIES IN BIOMEDICAL SCIENCER25GM055036 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SUMMERS, MICHAEL FINLEY · 1996 to 2021
$16.9M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
Candida albicans Epithelial Cell Interactions and Oropharyngeal DiseaseR01DE017088 · NIDCR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI FILLER, SCOTT G · 2005 to 2014
$3.4M
Candida Invasion of Endothelium and VirulenceR01AI054928 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI FILLER, SCOTT G · 2004 to 2013
$2.9M
IMMUNITY AND INFECTIONT32AI007540 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI KAPER, JAMES B · 1998 to 2018
$2.2M
The Microbial Ecology of Bacterial Vaginosis: A Fine Scale Resolution MetagenomicUH2AI083264 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RAVEL, JACQUES · 2009 to 2011
$1.9M
CANDIDA GENE EXPRESSION DURING OROPHARYNGEAL INFECTIONR21DE023311 · NIDCR · CARNEGIE-MELLON UNIVERSITY · PI MITCHELL, AARON P · 2013 to 2014
$411k
NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1TR000124NCRR NIH HHS UL1 RR033176NIAID NIH HHS HHSN272200900009CNIAID NIH HHS R01 AI054928NIAID NIH HHS R01AI054928NIAID NIH HHS T32 AI007540NIAID NIH HHS U19 AI110820NIAID NIH HHS U19AI110820NIAID NIH HHS UH2 AI083264NIAID NIH HHS UH2AI083264NIDCR NIH HHS R01 DE017088NIDCR NIH HHS R01DE017088NIDCR NIH HHS R21 DE023311NIDCR NIH HHS R21 DE023311A1NIGMS NIH HHS R25 GM055036PHS HHS HHSN272200900009C
6 · The paper itself

Abstract

Candida albicans, the major invasive fungal pathogen of humans, can cause both debilitating mucosal infections and fatal invasive infections. Understanding the complex nature of the host-pathogen interaction in each of these contexts is essential to developing desperately needed therapies to treat fungal infections. RNA-seq enables a systems-level understanding of infection by facilitating comprehensive analysis of transcriptomes from multiple species (e.g., host and pathogen) simultaneously. We used RNA-seq to characterize the transcriptomes of both C. albicans and human endothelial cells or oral epithelial cells during in vitro infection. Network analysis of the differentially expressed genes identified the activation of several signaling pathways that have not previously been associated with the host response to fungal pathogens. Using an siRNA knockdown approach, we demonstrate that two of these pathways-platelet-derived growth factor BB (PDGF BB) and neural precursor-cell-expressed developmentally down-regulated protein 9 (NEDD9)-govern the host-pathogen interaction by regulating the uptake of C. albicans by host cells. Using RNA-seq analysis of a mouse model of hematogenously disseminated candidiasis (HDC) and episodes of vulvovaginal candidiasis (VVC) in humans, we found evidence that many of the same signaling pathways are activated during mucosal (VVC) and/or disseminated (HDC) infections in vivo. Our analyses have uncovered several signaling pathways at the interface between C. albicans and host cells in various contexts of infection, and suggest that PDGF BB and NEDD9 play important roles in this interaction. In addition, these data provide a valuable community resource for better understanding host-fungal pathogen interactions.

Indexed as

Signal TransductionAdaptor Proteins, Signal TransducingAnimalsBecaplerminCandida albicansCandidiasisHumansHuman Umbilical Vein Endothelial CellsMiceMice, Inbred BALB CPhosphoproteinsProto-Oncogene Proteins c-sisTranscriptomeAdaptor Proteins, Signal TransducingBecaplerminNEDD9 protein, humanPhosphoproteinsProto-Oncogene Proteins c-sis

Identifiers

PMID25858952
PMCPMC4417116
OpenAlexW2112367826

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.