Evidence map›Paper›PMID 25858434›Full record

ArticleMolecular biology and evolution2015

Emerging OP354-Like P[8] Rotaviruses Have Rapidly Dispersed from Asia to Other Continents.

Mark Zeller, Elisabeth Heylen, Susan Damanka, Corinna Pietsch, Celeste Donato, Tsutomu Tamura, Ruta Kulkarni, Ritu Arora, Nigel Cunliffe, Leena Maunula and 16 more

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  9. Viruses · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Mark ZellerKU Leuven-University of Leuven, Department of Microbiology and Immunology, Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Leuven, Belgium mark.zeller@uz.kuleuven.ac.be jelle.matthijnssens@uz.kuleuven.ac.be.
Elisabeth HeylenKU Leuven-University of Leuven, Department of Microbiology and Immunology, Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Leuven, Belgium.
Susan DamankaNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Ghana.
Corinna PietschInstitute of Virology, Leipzig University, Leipzig, Germany.
Celeste DonatoEnteric Virus Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.
Tsutomu TamuraDepartment of Virology, Niigata Prefectural Institute of Public Health and Environmental Sciences, Niigata, Japan.
Ruta KulkarniEnteric Viruses Group, National Institute of Virology, Pune, Maharashtra, India.
Ritu AroraEnteric Viruses Group, National Institute of Virology, Pune, Maharashtra, India.
Nigel CunliffeDepartment of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom.
Leena MaunulaDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland.
Christiaan PotgieterDepartment of Biochemistry, Centre for Human Metabonomics, North-West University, Potchefstroom, South Africa Deltamune (Pty) Ltd, Lyttelton, Centurion, South Africa.
Sana TamimDepartment of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan.
Sarah De CosterKU Leuven-University of Leuven, Department of Microbiology and Immunology, Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Leuven, Belgium.
Elena ZhirakovskayaLaboratory of Molecular Microbiology, Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Salwa BdourDepartment of Biological Sciences, Faculty of Science, The University of Jordan, Amman, Jordan.
Helen O'SheaDepartment of Biological Sciences, Cork Institute of Technology, Bishopstown, Cork, Ireland.
Carl D KirkwoodEnteric Virus Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.
Mapaseka SeheriSouth African Medical Research Council/Diarrhoeal Pathogens Research Unit, Faculty of Health Sciences, Sefako Makgatho Health Sciences University, Medunsa, Pretoria, South Africa.
Martin Monene NyagaSouth African Medical Research Council/Diarrhoeal Pathogens Research Unit, Faculty of Health Sciences, Sefako Makgatho Health Sciences University, Medunsa, Pretoria, South Africa.
Jeffrey MphahleleSouth African Medical Research Council/Diarrhoeal Pathogens Research Unit, Faculty of Health Sciences, Sefako Makgatho Health Sciences University, Medunsa, Pretoria, South Africa.
Shobha D ChitambarEnteric Viruses Group, National Institute of Virology, Pune, Maharashtra, India.
Ron DaganSoroka University Medical Center and the Faculty of Health Sciences, Ben-Gurion University of Negev, Beer Sheva, Israel.
George ArmahNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Ghana.
Nina TikunovaLaboratory of Molecular Microbiology, Institute of Chemical Biology and Fundamental Medicine, Novosibirsk, Russia.
Marc Van RanstKU Leuven-University of Leuven, Department of Microbiology and Immunology, Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Leuven, Belgium.
Jelle MatthijnssensKU Leuven-University of Leuven, Department of Microbiology and Immunology, Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Leuven, Belgium mark.zeller@uz.kuleuven.ac.be jelle.matthijnssens@uz.kuleuven.ac.be.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of human group A rotaviruses possess the P[8] VP4 genotype. Recently, a genetically distinct subtype of the P[8] genotype, also known as OP354-like P[8] or lineage P[8]-4, emerged in several countries. However, it is unclear for how long the OP354-like P[8] gene has been circulating in humans and how it has spread. In a global collaborative effort 98 (near-)complete OP354-like P[8] VP4 sequences were obtained and used for phylogeographic analysis to determine the viral migration patterns. During the sampling period, 1988-2012, we found that South and East Asia acted as a source from which strains with the OP354-like P[8] gene were seeded to Africa, Europe, and North America. The time to the most recent common ancestor (TMRCA) of all OP354-like P[8] genes was estimated at 1987. However, most OP354-like P[8] strains were found in three main clusters with TMRCAs estimated between 1996 and 2001. The VP7 gene segment of OP354-like P[8] strains showed evidence of frequent reassortment, even in localized epidemics, suggesting that OP354-like P[8] genes behave in a similar manner on the evolutionary level as other P[8] subtypes. The results of this study suggest that OP354-like P[8] strains have been able to disperse globally in a relatively short time period. This, in combination with a relatively large genetic distance to other P[8] subtypes, might result in a lower vaccine effectiveness, underscoring the need for a continued surveillance of OP354-like P[8] strains, especially in countries where rotavirus vaccination programs are in place.

Indexed as

Genes, ViralGenotypeRotavirusRotavirus InfectionsAsiaHumansPhylogeographyemerging virusesOP354-like P[8]reassortmentrotaviruses

Identifiers

PMID25858434
PMCPMC4833074

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.