Evidence map›Paper›PMID 25857630›Full record

ArticleInternational journal of cancer2015

NF-κB and stat3 transcription factor signatures differentiate HPV-positive and HPV-negative head and neck squamous cell carcinoma.

Daria A Gaykalova, Judith B Manola, Hiroyuki Ozawa, Veronika Zizkova, Kathryn Morton, Justin A Bishop, Rajni Sharma, Chi Zhang, Christina Michailidi, Michael Considine and 10 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  9. Article
  10. Do or Die: HPV E5, E6 and E7 in Cell Death Evasion.Pathogens (Basel, Switzerland) · 2022
    Review
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  15. Article
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  18. The functional GRHL3-filaggrin axis maintains a tumor differentiation potential and influences drug sensitivity.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 2 countries.

Daria A GaykalovaDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Judith B ManolaDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA.
Hiroyuki OzawaDepartment of Oncology, Johns Hopkins Medical Institutions, Baltimore, MD.
Veronika ZizkovaDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Kathryn MortonDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Justin A BishopDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Rajni SharmaDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD.
Chi ZhangDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Christina MichailidiDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Michael ConsidineDivision of Oncology Biostatistics, Johns Hopkins Medical Institutions, Baltimore, MD.
Marietta TanDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Elana J FertigDivision of Oncology Biostatistics, Johns Hopkins Medical Institutions, Baltimore, MD.
Patrick T HennesseyDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Julie AhnDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Wayne M KochDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
William H WestraDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Zubair KhanDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Christine H ChungDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Michael F OchsDivision of Oncology Biostatistics, Johns Hopkins Medical Institutions, Baltimore, MD.
Joseph A CalifanoDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, MD.
Johns Hopkins University · USDana-Farber Cancer Institute · US

Funding

Project-006U10CA180820 · NCI · ECOG-ACRIN MEDICAL RESEARCH FOUNDATION · PI Peter J ODwyer, MITCHELL D. SCHNALL · 2014 to 2026
$167.6M
Statistics CoreU10CA180794 · NCI · DANA-FARBER CANCER INST · PI PAUL J CATALANO, CONSTANTINE A. GATSONIS · 2014 to 2026
$111.2M
ECOG Statistical Office Data Management GrantU10CA066636 · NCI · FRONTIER SCI &TECHNOLOGY RSCH FDN, INC · PI GRAY, ROBERT J · 1994 to 2013
$39.5M
PROVIDE STATISTICAL SERVICESU10CA023318 · NCI · DANA-FARBER CANCER INSTITUTE · PI GRAY, ROBERT J · 1985 to 2013
$33.4M
TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2007 to 2016
$27.1M
GENETIC ALTERATIONS AS DIAGNOSTIC AND PROGNOSTIC BIOMARKR01DE013152 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI KOCH, WAYNE M · 1999 to 2013
$5.0M
Epigenetic Biomarker Discovery in HPV Related HNSCCR01DE023347 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CALIFANO, JOSEPH A · 2013 to 2017
$1.9M
Dynamical Models of Cetuximab Resistance in HNSCC Based on Serial Genomics DataR01CA177669 · NCI · JOHNS HOPKINS UNIVERSITY · PI FERTIG, ELANA · 2014 to 2019
$1.8M
Integrative Pathway Analysis of Eqigenomic/transcriptional Alteration in HNSCCRC1DE020324 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$918k
Modeling Transcriptional Reprogramming by Markov Chain Monte Carlo SamplingR01LM011000 · NLM · JOHNS HOPKINS UNIVERSITY · PI OCHS, MICHAEL F · 2012 to 2014
$886k
Validation of epigenetic biomarkers of head and neck cancer progression--OLDRC2DE020789 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$546k
NCI NIH HHS R01 CA177669NCI NIH HHS U10 CA023318NCI NIH HHS U10 CA066636NCI NIH HHS U10 CA180794NCI NIH HHS U10 CA180820NIDCR NIH HHS P50 DE019032NIDCR NIH HHS R01 DE013152NIDCR NIH HHS R01 DE023347NIDCR NIH HHS RC1 DE020324NIDCR NIH HHS RC2 DE020789NLM NIH HHS R01 LM011000
6 · The paper itself

Abstract

Using high-throughput analyses and the TRANSFAC database, we characterized TF signatures of head and neck squamous cell carcinoma (HNSCC) subgroups by inferential analysis of target gene expression, correcting for the effects of DNA methylation and copy number. Using this discovery pipeline, we determined that human papillomavirus-related (HPV+) and HPV- HNSCC differed significantly based on the activity levels of key TFs including AP1, STATs, NF-κB and p53. Immunohistochemical analysis confirmed that HPV- HNSCC is characterized by co-activated STAT3 and NF-κB pathways and functional studies demonstrate that this phenotype can be effectively targeted with combined anti-NF-κB and anti-STAT therapies. These discoveries correlate strongly with previous findings connecting STATs, NF-κB and AP1 in HNSCC. We identified five top-scoring pair biomarkers from STATs, NF-κB and AP1 pathways that distinguish HPV+ from HPV- HNSCC based on TF activity and validated these biomarkers on TCGA and on independent validation cohorts. We conclude that a novel approach to TF pathway analysis can provide insight into therapeutic targeting of patient subgroup for heterogeneous disease such as HNSCC.

Indexed as

Carcinoma, Squamous CellCell Line, TumorDNA MethylationGene Expression Regulation, NeoplasticHead and Neck NeoplasmsHumansNF-kappa BOligonucleotide Array Sequence AnalysisPapillomavirus InfectionsSignal TransductionSquamous Cell Carcinoma of Head and NeckSTAT3 Transcription FactorNF-kappa BSTAT3 protein, humanSTAT3 Transcription FactorHNSCCHPVNF-κBSTAT3transcription factor

Identifiers

PMID25857630
PMCPMC4629062
OpenAlexW1597849933

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.