Evidence map›Paper›PMID 25857441›Full record

ReviewBiochimica et biophysica acta2015

Establishing pluripotency in early development.

Sarita S Paranjpe, Gert Jan C Veenstra

Open access · hybridAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Resetting the epigenome: Methylation dynamics in cancer stem cells.Frontiers in cell and developmental biology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The primary role of zebrafishDevelopment (Cambridge, England) · 2018
    Article
  18. Article
  19. Article
  20. Epigenetic DNA Methylation MediatingFrontiers in physiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Sarita S ParanjpeRadboud University, Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Gert Jan C VeenstraRadboud University, Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands. Electronic address: g.veenstra@science.ru.nl.
Radboud Institute for Molecular Life Sciences · NLRadboud University Nijmegen · NL

Funding

Epigenome maps of regulatory activity in Xenopus tropicalis embryosR01HD069344 · NICHD · STICHTING RADBOUD UNIVERSITEIT · PI VEENSTRA, GERT JAN C. · 2011 to 2015
$1.4M
NICHD NIH HHS R01 HD069344NICHD NIH HHS R01HD069344
6 · The paper itself

Abstract

The earliest steps of embryonic development involve important changes in chromatin and transcription factor networks, which are orchestrated to establish pluripotent cells that will form the embryo. DNA methylation, histone modifications, the pluripotency regulatory network of transcription factors, maternal factors and newly translated proteins all contribute to these transitions in dynamic ways. Moreover, these dynamics are linked to the onset of zygotic transcription. We will review recent progress in our understanding of chromatin state and regulation of gene expression in the context of embryonic development in vertebrates, in particular mouse, Xenopus and zebrafish. We include work on mouse embryonic stem cells and highlight work that illustrates how early embryonic dynamics establish gene regulatory networks and the state of pluripotency.

Indexed as

Pluripotent Stem CellsAnimalsChromatinDNA MethylationEmbryonic DevelopmentGene Expression Regulation, DevelopmentalGene Regulatory NetworksMiceTranscription FactorsXenopusZebrafishChromatinTranscription FactorsChromatinEmbryoMethylationPluripotencyZygotic genome activation

Identifiers

PMID25857441
PMCPMC4437833
OpenAlexW2149277119

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.