Evidence map›Paper›PMID 25856398›Full record

ArticlePloS one2015

A gateway-based system for fast evaluation of protein-protein interactions in bacteria.

Thorsten Wille, Britta Barlag, Vladimir Jakovljevic, Michael Hensel, Victor Sourjik, Roman G Gerlach

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Bioengineering ofToxins · 2021
    Review
  6. Three Ribosomal Operons ofFrontiers in microbiology · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Thorsten WilleJunior Research Group 3, Robert Koch-Institute, Wernigerode Branch, Wernigerode, Germany.
Britta BarlagDivision of Microbiology, School of Biology/Chemistry, University of Osnabrück, Osnabrück, Germany.
Vladimir JakovljevicCenter for Molecular Biology at the University of Heidelberg (ZMBH), DKFZ (German Cancer Research Center) -ZMBH Alliance, Heidelberg, Germany.
Michael HenselDivision of Microbiology, School of Biology/Chemistry, University of Osnabrück, Osnabrück, Germany.
Victor SourjikCenter for Molecular Biology at the University of Heidelberg (ZMBH), DKFZ (German Cancer Research Center) -ZMBH Alliance, Heidelberg, Germany; Max Planck Institute for Terrestrial Microbiology & LOEWE (state offensive for the development of scientific and economic excellence) Center for Synthetic Microbiology (SYNMIKRO), Marburg, Germany.
Roman G GerlachJunior Research Group 3, Robert Koch-Institute, Wernigerode Branch, Wernigerode, Germany.
Osnabrück University · DERobert Koch Institute · DEGerman Cancer Research Center · DELoewe Center for Synthetic Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-protein interactions are important layers of regulation in all kingdoms of life. Identification and characterization of these interactions is one challenging task of the post-genomic era and crucial for understanding of molecular processes within a cell. Several methods have been successfully employed during the past decades to identify protein-protein interactions in bacteria, but most of them include tedious and time-consuming manipulations of DNA. In contrast, the MultiSite Gateway system is a fast tool for transfer of multiple DNA fragments between plasmids enabling simultaneous and site directed cloning of up to four fragments into one construct. Here we developed a new set of Gateway vectors including custom made entry vectors and modular Destination vectors for studying protein-protein interactions via Fluorescence Resonance Energy Transfer (FRET), Bacterial two Hybrid (B2H) and split Gaussia luciferase (Gluc), as well as for fusions with SNAP-tag and HaloTag for dual-color super-resolution microscopy. As proof of principle, we characterized the interaction between the Salmonella effector SipA and its chaperone InvB via split Gluc and B2H approach. The suitability for FRET analysis as well as functionality of fusions with SNAP- and HaloTag could be demonstrated by studying the transient interaction between chemotaxis response regulator CheY and its phosphatase CheZ.

Indexed as

Genetic VectorsBacterial ProteinsCloning, MolecularDNA, BacterialEscherichia coliEscherichia coli ProteinsFluorescence Resonance Energy TransferLuciferasesMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsMicrofilament ProteinsPlasmidsProtein Interaction MapsSalmonellaBacterial ProteinscheY protein, E coliDNA, BacterialEscherichia coli ProteinsLuciferasesMembrane ProteinsMethyl-Accepting Chemotaxis ProteinsMicrofilament ProteinsSipA protein, Salmonella

Identifiers

PMID25856398
PMCPMC4391838
OpenAlexW2001524723

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.