ArticlePloS one2015
Bioinformatic identification and expression analysis of banana microRNAs and their targets.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Banana breeding by genome design.Journal of integrative plant biology · 2025Review
- In Silico Genome-Wide Profiling of Conserved miRNAs in AAA, AAB, and ABB Groups ofInternational journal of molecular sciences · 2025Article
- Characterization and bioinformatics analysis ofNon-coding RNA research · 2022Article
- Structural and Functional Characteristics of miRNAs in Five Strategic Millet Species and Their Utility in Drought Tolerance.Frontiers in genetics · 2020Article
- Identification of Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4) responsive miRNAs in banana root.Scientific reports · 2019Article
- Identification and co-evolution pattern of stem cell regulator miR394s and their targets among diverse plant species.BMC evolutionary biology · 2019Article
- Banana sRNAome and degradome identify microRNAs functioning in differential responses to temperature stress.BMC genomics · 2019Article
- Computational identification and comparative analysis of miRNA precursors in three palm species.Planta · 2016Article
- MiR-375 targets KLF4 and impacts the proliferation of colorectal carcinoma.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016Article
- Translating the "Banana Genome" to Delineate Stress Resistance, Dwarfing, Parthenocarpy and Mechanisms of Fruit Ripening.Frontiers in plant science · 2016Review
- Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing.BMC genomics · 2015Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) represent a class of endogenous non-coding small RNAs that play important roles in multiple biological processes by degrading targeted mRNAs or repressing mRNA translation. Thousands of miRNAs have been identified in many plant species, whereas only a limited number of miRNAs have been predicted in M. acuminata (A genome) and M. balbisiana (B genome). Here, previously known plant miRNAs were BLASTed against the Expressed Sequence Tag (EST) and Genomic Survey Sequence (GSS), a database of banana genes. A total of 32 potential miRNAs belonging to 13 miRNAs families were detected using a range of filtering criteria. 244 miRNA:target pairs were subsequently predicted, most of which encode transcription factors or enzymes that participate in the regulation of development, growth, metabolism, and other physiological processes. In order to validate the predicted miRNAs and the mutual relationship between miRNAs and their target genes, qRT-PCR was applied to detect the tissue-specific expression levels of 12 putative miRNAs and 6 target genes in roots, leaves, flowers, and fruits. This study provides some important information about banana pre-miRNAs, mature miRNAs, and miRNA target genes and these findings can be applied to future research of miRNA functions.
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