Evidence map›Paper›PMID 25856303›Full record

ArticlePloS one2015

Structural modeling of a novel CAPN5 mutation that causes uveitis and neovascular retinal detachment.

Alexander G Bassuk, Steven Yeh, Shu Wu, Daniel F Martin, Stephen H Tsang, Lokesh Gakhar, Vinit B Mahajan

Open access · goldAbstract readCase Reports
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  7. Review
  8. Observational
  9. The C2 domain of calpain 5 contributes to enzyme activation and membrane localization.Biochimica et biophysica acta. Molecular cell research · 2021
    Article
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  11. Review
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  15. Article
  16. Article
  17. In Vivo Expression of Mutant Calpains in the Eye Using Lentivirus.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  18. Capn5 Expression in the Healthy and Regenerating Zebrafish Retina.Investigative ophthalmology & visual science · 2018
    Article
  19. A novel de novoCold Spring Harbor molecular case studies · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Alexander G BassukDepartment of Pediatrics, University of Iowa, Iowa City, IA, United States of America; Omics Lab, University of Iowa, Iowa City, IA, United States of America.
Steven YehDepartment of Ophthalmology, Emory University School of Medicine, Atlanta, GA, United States of America.
Shu WuOmics Lab, University of Iowa, Iowa City, IA, United States of America.
Daniel F MartinCole Eye Institute, Cleveland Clinic, Cleveland, OH, United States of America.
Stephen H TsangBernard & Shirlee Brown Glaucoma Laboratory and Barbara & Donald Jonas Laboratory of Regenerative Medicine, Departments of Ophthalmology and Pathology and Cell Biology, Columbia University, New York, NY, United States of America.
Lokesh GakharDepartment of Biochemistry, University of Iowa, Iowa City, IA, United States of America; Protein Crystallography Facility, University of Iowa, Iowa City, IA, United States of America.
Vinit B MahajanOmics Lab, University of Iowa, Iowa City, IA, United States of America; Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA, United States of America.
University of Iowa · USCleveland Clinic · USColumbia University · USEmory University · US

Funding

Molecular Genetics of Age Related Macular DegenerationR01EY016822 · NEI · UNIVERSITY OF IOWA · PI STONE, EDWIN M · 2005 to 2013
$4.0M
Structure and Function of Calpain-5R01EY024665 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2015 to 2019
$1.9M
Molecular Genetics of Dominant Neovascular Inflammatory VitreoretinopathyK08EY020530 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2011 to 2015
$1.1M
NEI NIH HHS K08 EY020530NEI NIH HHS K08EY020530NEI NIH HHS R01 EY016822NEI NIH HHS R01EY016822NEI NIH HHS R01 EY024665
6 · The paper itself

Abstract

CAPN5 mutations have been linked to autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV), a blinding autoimmune eye disease. Here, we link a new CAPN5 mutation to ADNIV and model the three-dimensional structure of the resulting mutant protein. In our study, a kindred with inflammatory vitreoretinopathy was evaluated by clinical eye examinations, DNA sequencing, and protein structural modeling to investigate the disease-causing mutation. Two daughters of an affected mother demonstrated symptoms of stage III ADNIV, with posterior uveitis, cystoid macular edema, intraocular fibrosis, retinal neovascularization, retinal degeneration, and cataract. The women also harbored a novel guanine to thymine (c.750G>T, p.Lys250Asn) missense mutation in exon 6 of CAPN5, a gene that encodes a calcium-activated cysteine protease, calpain-5. Modeling based on the structures of all known calpains revealed the mutation falls within a calcium-sensitive flexible gating loop that controls access to the catalytic groove. Three-dimensional modeling placed the new mutation in a region adjacent to two previously identified disease-causing mutations, all three of which likely disrupt hydrogen bonding within the gating loop, yielding a CAPN5 with altered enzymatic activity. This is the third case of a CAPN5 mutation leading to inherited uveitis and neovascular vitreoretinopathy, suggesting patients with ADNIV features should be tested for CAPN5 mutations. Structural modeling of novel variants can be used to support mechanistic consequences of the disease-causing variants.

Indexed as

Models, MolecularPhenotypeBase SequenceCalpainComputational BiologyDNA PrimersFemaleFluorescein AngiographyHumansMolecular Sequence DataMutation, MissensePedigreeProtein ConformationRetinal DetachmentSequence Analysis, DNATomography, Optical CoherenceCalpainCapn5 protein, humanDNA Primers

Identifiers

PMID25856303
PMCPMC4391918
OpenAlexW2071606495

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.