Evidence map›Paper›PMID 25856081›Full record

ArticlePloS one2015

Nano-mole scale side-chain signal assignment by 1H-detected protein solid-state NMR by ultra-fast magic-angle spinning and stereo-array isotope labeling.

Songlin Wang, Sudhakar Parthasarathy, Yusuke Nishiyama, Yuki Endo, Takahiro Nemoto, Kazuo Yamauchi, Tetsuo Asakura, Mitsuhiro Takeda, Tsutomu Terauchi, Masatsune Kainosho and 1 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Structural characterization of E22G AβPhysical chemistry chemical physics : PCCP · 2024
    Article
  3. Review
  4. Chemical reviews · 2022
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Protein-Protein Interfaces Probed by Methyl Labeling and Proton-Detected Solid-State NMR Spectroscopy.Chemphyschem : a European journal of chemical physics and physical chemistry · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Songlin WangDepartment of Chemistry and University of Illinois at Chicago, Chicago, Illinois, United States of America.
Sudhakar ParthasarathyDepartment of Chemistry and University of Illinois at Chicago, Chicago, Illinois, United States of America.
Yusuke NishiyamaJEOL RESONANCE Inc., Akishima, Tokyo, Japan; RIKEN CLST-JEOL collaboration center, RIKEN, Yokohama, Kanagawa, Japan.
Yuki EndoJEOL RESONANCE Inc., Akishima, Tokyo, Japan.
Takahiro NemotoJEOL RESONANCE Inc., Akishima, Tokyo, Japan.
Kazuo YamauchiSchool of Science and Technology, Nazarbayev University, Astana, Kazakhstan; Nuclear Magnetic Resonance Core Lab., King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Tetsuo AsakuraDepartment of Biotechnology, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan.
Mitsuhiro TakedaStructural Biology Research Center, Graduate School of Science, Furocho, Chikusa-ku, Nagoya University, Nagoya, Japan 464-8601.
Tsutomu TerauchiSAIL Technologies Co., Inc., Tsurumi-ku, Yokohama, Kanagawa, Japan.
Masatsune KainoshoStructural Biology Research Center, Graduate School of Science, Furocho, Chikusa-ku, Nagoya University, Nagoya, Japan 464-8601; Center for Priority Areas, Tokyo Metropolitan University, Tokyo, Japan.
Yoshitaka IshiiDepartment of Chemistry and University of Illinois at Chicago, Chicago, Illinois, United States of America; Center for Structural Biology, University of Illinois at Chicago, Chicago, Illinois, United States of America.

Funding

Acquisition of 700 MHz Wide-Bore NMR System for Solid-state NMRS10RR025105 · NCRR · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ISHII, YOSHITAKA · 2009 to 2009
$2.0M
NCRR NIH HHS 1S10 RR025105NCRR NIH HHS S10 RR025105
6 · The paper itself

Abstract

We present a general approach in 1H-detected 13C solid-state NMR (SSNMR) for side-chain signal assignments of 10-50 nmol quantities of proteins using a combination of a high magnetic field, ultra-fast magic-angle spinning (MAS) at ~80 kHz, and stereo-array-isotope-labeled (SAIL) proteins [Kainosho M. et al., Nature 440, 52-57, 2006]. First, we demonstrate that 1H indirect detection improves the sensitivity and resolution of 13C SSNMR of SAIL proteins for side-chain assignments in the ultra-fast MAS condition. 1H-detected SSNMR was performed for micro-crystalline ubiquitin (~55 nmol or ~0.5mg) that was SAIL-labeled at seven isoleucine (Ile) residues. Sensitivity was dramatically improved by 1H-detected 2D 1H/13C SSNMR by factors of 5.4-9.7 and 2.1-5.0, respectively, over 13C-detected 2D 1H/13C SSNMR and 1D 13C CPMAS, demonstrating that 2D 1H-detected SSNMR offers not only additional resolution but also sensitivity advantage over 1D 13C detection for the first time. High 1H resolution for the SAIL-labeled side-chain residues offered reasonable resolution even in the 2D data. A 1H-detected 3D 13C/13C/1H experiment on SAIL-ubiquitin provided nearly complete 1H and 13C assignments for seven Ile residues only within ~2.5 h. The results demonstrate the feasibility of side-chain signal assignment in this approach for as little as 10 nmol of a protein sample within ~3 days. The approach is likely applicable to a variety of proteins of biological interest without any requirements of highly efficient protein expression systems.

Indexed as

Carbon IsotopesIsotope LabelingModels, ChemicalMolecular StructureProteinsProton Magnetic Resonance SpectroscopyCarbon IsotopesProteins

Identifiers

PMID25856081
PMCPMC4391754

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.