Evidence map›Paper›PMID 25855803›Full record

ArticleHuman molecular genetics2015

Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis.

Alistair T Pagnamenta, Malcolm F Howard, Eva Wisniewski, Niko Popitsch, Samantha J L Knight, David A Keays, Gerardine Quaghebeur, Helen Cox, Phillip Cox, Tamas Balla and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Pooled it
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  12. Phosphatidylinositol 4-phosphate; A minor lipid with multiple personalities.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2025
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  16. An update on autophagy disorders.Journal of inherited metabolic disease · 2025
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  19. Two Novel Variants inNeurology. Genetics · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Alistair T PagnamentaNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Malcolm F HowardNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Eva WisniewskiSection on Molecular Signal Transduction, Program for Developmental Neuroscience, Eunice Kennedy Shriver NICHD, National Institutes of Health, Bethesda, MD 20892, USA.
Niko PopitschNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Samantha J L KnightNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
David A KeaysInstitute of Molecular Pathology, Vienna 1030, Austria.
Gerardine QuaghebeurDepartment of Neuroradiology.
Helen CoxWest Midlands Regional Clinical Genetics Service, Clinical Genetics Unit and.
Phillip CoxDepartment of Histopathology, Birmingham Women's Hospital NHS Foundation Trust, Birmingham B15 2TG, UK.
Tamas BallaSection on Molecular Signal Transduction, Program for Developmental Neuroscience, Eunice Kennedy Shriver NICHD, National Institutes of Health, Bethesda, MD 20892, USA.
Jenny C TaylorNational Institute for Health Research Biomedical Research Centre, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.
Usha KiniDepartment of Clinical Genetics, Oxford University Hospitals NHS Trust, Oxford OX3 9DU, UK, usha.kini@ouh.nhs.uk.
Centre for Human Genetics · GBEunice Kennedy Shriver National Institute of Child Health and Human Development · USNational Institute for Health Research · GBBirmingham Women’s and Children’s NHS Foundation Trust · GBOxford University Hospitals NHS Trust · GBWessex Regional Genetics Laboratory · GB

Funding

Medical Research Council G0900747Wellcome TrustWellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

Polymicrogyria (PMG) is a structural brain abnormality involving the cerebral cortex that results from impaired neuronal migration and although several genes have been implicated, many cases remain unsolved. In this study, exome sequencing in a family where three fetuses had all been diagnosed with PMG and cerebellar hypoplasia allowed us to identify regions of the genome for which both chromosomes were shared identical-by-descent, reducing the search space for causative variants to 8.6% of the genome. In these regions, the only plausibly pathogenic mutations were compound heterozygous variants in PI4KA, which Sanger sequencing confirmed segregated consistent with autosomal recessive inheritance. The paternally transmitted variant predicted a premature stop mutation (c.2386C>T; p.R796X), whereas the maternally transmitted variant predicted a missense substitution (c.5560G>A; p.D1854N) at a conserved residue within the catalytic domain. Functional studies using expressed wild-type or mutant PI4KA enzyme confirmed the importance of p.D1854 for kinase activity. Our results emphasize the importance of phosphoinositide signalling in early brain development.

Indexed as

Germ-Line MutationAmino Acid SequenceArthrogryposisBase SequenceBrainCerebellumDevelopmental DisabilitiesExomeFemaleFetal DiseasesHumansInfantMaleMinor Histocompatibility AntigensMolecular Sequence DataMutation, MissenseMinor Histocompatibility Antigensphosphatidylinositol phosphate 4-kinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID25855803
PMCPMC4459391
OpenAlexW2097066373

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.