ArticleMolecular genetics and genomics : MGG2015
Genome-wide characterization and analysis of F-box protein-encoding genes in the Malus domestica genome.
Article in Molecular genetics and genomics : MGG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 46 citations in OpenAlex.
- Genome-Wide Characterization of the F-Box Gene Family inBiology · 2026Article
- Identification and analysis of drought-responsive F-box genes in upland rice and involvement of OsFBX148 in ABA response and ROS accumulation.BMC plant biology · 2024Article
- Deciphering the mechanism of E3 ubiquitin ligases in plant responses to abiotic and biotic stresses and perspectives on PROTACs for crop resistance.Plant biotechnology journal · 2024Review
- Article
- Role of F-box E3-ubiquitin ligases in plant development and stress responses.Plant cell reports · 2023Review
- Insights of auxin signaling F-box genes in wheat (Triticum aestivum L.) and their dynamic expression during the leaf rust infection.Protoplasma · 2023Article
- Genome-Wide Analysis and Characterization of Eggplant F-Box Gene Superfamily: Gene Evolution and Expression Analysis under Stress.International journal of molecular sciences · 2022Article
- Article
- Genome-Wide Identification and Expression Patterns of the F-box Family in Poplar under Salt Stress.International journal of molecular sciences · 2022Article
- Small RNA, Transcriptome and Degradome Analysis of the Transgenerational Heat Stress Response Network in Durum Wheat.International journal of molecular sciences · 2021Article
- Molecular Characterization, Gene Evolution and Expression Analysis of the F-Box Gene Family in Tomato (Genes · 2021Article
- Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection.BMC plant biology · 2020Article
- Review
- Cloning, sequencing, and expression analysis of 32 NAC transcription factors (MdNAC) in apple.PeerJ · 2020Article
- Genome-wide analysis and characterization of F-box gene family in Gossypium hirsutum L.BMC genomics · 2019Article
- Article
- Genome-wide analysis of genes encoding core components of the ubiquitin system in soybean (Glycine max) reveals a potential role for ubiquitination in host immunity against soybean cyst nematode.BMC plant biology · 2018Article
- Genome-wide identification and expression analysis of the B-box gene family in the Apple (Malus domestica Borkh.) genome.Molecular genetics and genomics : MGG · 2018Article
- Genome-Wide Analyses of the Soybean F-Box Gene Family in Response to Salt Stress.International journal of molecular sciences · 2017Article
- Concentration-dependent alterations in gene expression induced by cadmium in Solanum lycopersicum.Environmental science and pollution research international · 2017Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The F-box protein family is a large family that is characterized by conserved F-box domains of approximately 40-50 amino acids in the N-terminus. F-box proteins participate in diverse cellular processes, such as development of floral organs, signal transduction and response to stress, primarily as a component of the Skp1-cullin-F-box (SCF) complex. In this study, using a global search of the apple genome, 517 F-box protein-encoding genes (F-box genes for short) were identified and further subdivided into 12 groups according to the characterization of known functional domains, which suggests the different potential functions or processes that they were involved in. Among these domains, the galactose oxidase domain was analyzed for the first time in plants, and this domain was present with or without the Kelch domain. The F-box genes were distributed in all 17 apple chromosomes with various densities and tended to form gene clusters. Spatial expression profile analysis revealed that F-box genes have organ-specific expression and are widely expressed in all organs. Proteins that contained the galactose oxidase domain were highly expressed in leaves, flowers and seeds. From a fruit ripening expression profile, 166 F-box genes were identified. The expressions of most of these genes changed little during maturation, but five of them increased significantly. Using qRT-PCR to examine the expression of F-box genes encoding proteins with domains related to stress, the results revealed that F-box proteins were up- or down-regulated, which suggests that F-box genes were involved in abiotic stress. The results of this study helped to elucidate the functions of F-box proteins, especially in Rosaceae plants.
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