Evidence map›Paper›PMID 25855067›Full record

ArticleGenetics2015

Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs.

Linlin Yin, Lisette A Maddison, Mingyu Li, Nergis Kara, Matthew C LaFave, Gaurav K Varshney, Shawn M Burgess, James G Patton, Wenbiao Chen

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 160 citations in OpenAlex.

  1. Technologies for engineering repetitive DNA.Quantitative biology (Beijing, China) · 2026
    Review
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  4. Versatile CRISPR-Cas Tools for Gene Regulation in Zebrafish via an Enhanced Q Binary System.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  6. Ppid is necessary for overnutrition-induced β-cell loss.American journal of physiology. Endocrinology and metabolism · 2026
    Article
  7. Article
  8. Advancing Knock-In Approaches for Robust Genome Editing in Zebrafish.bioRxiv : the preprint server for biology · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Barcoding Notch signaling in the developing brain.Development (Cambridge, England) · 2024
    Article
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  18. Evolution of two-pore domain potassium channels and their gene expression in zebrafish embryos.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  19. Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Linlin YinDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
Lisette A MaddisonDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.
Mingyu LiDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.ORCID http://orcid.org/0000-0003-1217-2929
Nergis KaraDepartment of Biological Science, Vanderbilt University, Nashville, Tennessee 37240.
Matthew C LaFaveTranslational and Functional Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.ORCID http://orcid.org/0000-0001-9165-041X
Gaurav K VarshneyTranslational and Functional Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.ORCID http://orcid.org/0000-0002-0429-1904
Shawn M BurgessTranslational and Functional Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892.ORCID http://orcid.org/0000-0003-1147-0596
James G PattonDepartment of Biological Science, Vanderbilt University, Nashville, Tennessee 37240.ORCID http://orcid.org/0000-0001-5749-0870
Wenbiao ChenDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232 wenbiao.chen@vanderbilt.edu.ORCID http://orcid.org/0000-0002-0750-8275
Vanderbilt University · USNational Human Genome Research Institute · USNational Institutes of Health · US

Funding

Zebrafish targeted mutagenesis and functional genomicsZIAHG000183 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BURGESS, SHAWN M · 2009 to 2025
$16.7M
A system for spatiotemporal gene inactivationR01DK088686 · NIDDK · VANDERBILT UNIVERSITY · PI CHEN, WENBIAO · 2010 to 2014
$1.7M
A newly discovered feed-forward mechanism controls photoreceptor fateR01EY024354 · NEI · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 2014 to 2016
$1.3M
A pipeline for rapid functional determination and drug discovery of UDP genesR21GM110311 · NIGMS · VANDERBILT UNIVERSITY · PI CHEN, WENBIAO, PAGE-MCCAW, PATRICK SCHONLEBER · 2014 to 2015
$432k
Intramural NIH HHSNEI NIH HHS R01 EY024354NIDDK NIH HHS DK088686NIDDK NIH HHS R01 DK088686NIGMS NIH HHS R21 GM110311
6 · The paper itself

Abstract

Determining the mechanism of gene function is greatly enhanced using conditional mutagenesis. However, generating engineered conditional alleles is inefficient and has only been widely used in mice. Importantly, multiplex conditional mutagenesis requires extensive breeding. Here we demonstrate a system for one-generation multiplex conditional mutagenesis in zebrafish (Danio rerio) using transgenic expression of both cas9 and multiple single guide RNAs (sgRNAs). We describe five distinct zebrafish U6 promoters for sgRNA expression and demonstrate efficient multiplex biallelic inactivation of tyrosinase and insulin receptor a and b, resulting in defects in pigmentation and glucose homeostasis. Furthermore, we demonstrate temporal and tissue-specific mutagenesis using transgenic expression of Cas9. Heat-shock-inducible expression of cas9 allows temporal control of tyr mutagenesis. Liver-specific expression of cas9 disrupts insulin receptor a and b, causing fasting hypoglycemia and postprandial hyperglycemia. We also show that delivery of sgRNAs targeting ascl1a into the eye leads to impaired damage-induced photoreceptor regeneration. Our findings suggest that CRISPR/Cas9-based conditional mutagenesis in zebrafish is not only feasible but rapid and straightforward.

Indexed as

CRISPR-Cas SystemsGene ExpressionGene TargetingMutagenesisTransgenesAnimalsAnimals, Genetically ModifiedGene OrderGene SilencingGenetic VectorsGlucoseHypopigmentationPhenotypeRNA, Guide, CRISPR-Cas SystemsZebrafishGlucoseRNA, Guide, CRISPR-Cas Systemsconditional mutagenesisCRISPR/Cas9glucose homeostasisretinal regenerationzebrafish

Identifiers

PMID25855067
PMCPMC4492370
OpenAlexW2098160856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.