Evidence map›Paper›PMID 25853889›Full record

ArticlePloS one2015

MYB elongation is regulated by the nucleic acid binding of NFκB p50 to the intronic stem-loop region.

Lloyd A Pereira, Honor J Hugo, Jordane Malaterre, Xu Huiling, Secondo Sonza, Alina Cures, Damian F J Purcell, Paul A Ramsland, Steven Gerondakis, Thomas J Gonda and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
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  8. Transcription regulation ofAnnals of translational medicine · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Lloyd A PereiraDifferentiation and Transcription Laboratory, Peter MacCallum Cancer Centre, Locked Bag #1, Melbourne, Victoria, 8006, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Honor J HugoVictorian Breast Cancer Consortium, Invasion and Metastasis Unit, St Vincent's Institute of Medical Research, Melbourne, Victoria, 3065, Australia.
Jordane MalaterreDifferentiation and Transcription Laboratory, Peter MacCallum Cancer Centre, Locked Bag #1, Melbourne, Victoria, 8006, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Xu HuilingDifferentiation and Transcription Laboratory, Peter MacCallum Cancer Centre, Locked Bag #1, Melbourne, Victoria, 8006, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Victoria, 3010, Australia; The Department of Pathology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Secondo SonzaThe Department of Microbiology and Immunology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Alina CuresDifferentiation and Transcription Laboratory, Peter MacCallum Cancer Centre, Locked Bag #1, Melbourne, Victoria, 8006, Australia.
Damian F J PurcellThe Department of Microbiology and Immunology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Paul A RamslandCentre for Immunology, Burnet Institute, Melbourne, Victoria, 3004, Australia; Department of Surgery (Austin Health), The University of Melbourne, Heidelberg, Victoria, 3084, Australia; Department of Immunology, Monash University, Alfred Medical Research and Education Precinct, Melbourne, Victoria, 3004, Australia.
Steven GerondakisAustralian Centre for Blood Diseases, Monash University, Prahran, Victoria 3004, Australia.
Thomas J GondaSchool of Pharmacy University of Queensland, Woolloongabba, Queensland, 4102, Australia.
Robert G RamsayDifferentiation and Transcription Laboratory, Peter MacCallum Cancer Centre, Locked Bag #1, Melbourne, Victoria, 8006, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Victoria, 3010, Australia; The Department of Pathology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
University of Melbourne · AUPeter MacCallum Cancer Centre · AUMonash University · AUSt Vincents Institute of Medical Research · AUUniversity of Queensland · AU

Funding

HIV as a key regulator of c-MYB in human cellsR21AI054158 · NIAID · PETER MACCALLUM CANCER CENTRE · PI RAMSAY, ROBERT G · 2003 to 2004
$300k
NIAID NIH HHS 5-R21-AI-54158-2NIAID NIH HHS R21 AI054158
6 · The paper itself

Abstract

MYB transcriptional elongation is regulated by an attenuator sequence within intron 1 that has been proposed to encode a RNA stem loop (SLR) followed by a polyU tract. We report that NFκBp50 can bind the SLR polyU RNA and promote MYB transcriptional elongation together with NFκBp65. We identified a conserved lysine-rich motif within the Rel homology domain (RHD) of NFκBp50, mutation of which abrogated the interaction of NFκBp50 with the SLR polyU and impaired NFκBp50 mediated MYB elongation. We observed that the TAR RNA-binding region of Tat is homologous to the NFκBp50 RHD lysine-rich motif, a finding consistent with HIV Tat acting as an effector of MYB transcriptional elongation in an SLR dependent manner. Furthermore, we identify the DNA binding activity of NFκBp50 as a key component required for the SLR polyU mediated regulation of MYB. Collectively these results suggest that the MYB SLR polyU provides a platform for proteins to regulate MYB and reveals novel nucleic acid binding properties of NFκBp50 required for MYB regulation.

Indexed as

DNA-Binding ProteinsGenes, mybHIV-1HumansIntronsInverted Repeat SequencesMutationNF-kappa B p50 SubunitRNA, ViralDNA-Binding ProteinsNF-kappa B p50 SubunitRNA, Viral

Identifiers

PMID25853889
PMCPMC4390348
OpenAlexW1985817918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.