Evidence map›Paper›PMID 25852725›Full record

ArticleFrontiers in plant science2015

Lathyrus sativus transcriptome resistance response to Ascochyta lathyri investigated by deepSuperSAGE analysis.

Nuno F Almeida, Nicolas Krezdorn, Björn Rotter, Peter Winter, Diego Rubiales, Maria C Vaz Patto

Abstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. WildPlants (Basel, Switzerland) · 2024
    Review
  3. Article
  4. Seed biopriming withPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Review
  16. Ribosomal DNA localization on Lathyrus species chromosomes by FISH.Journal, genetic engineering & biotechnology · 2020
    Article
  17. Review
  18. Article
  19. Review
  20. Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nuno F AlmeidaInstituto de Tecnologia Química e Biológica António Xavier, ITQB, Universidade Nova de Lisboa Oeiras, Portugal.
Nicolas KrezdornGenXPro GmbH Frankfurt am Main, Germany.
Björn RotterGenXPro GmbH Frankfurt am Main, Germany.
Peter WinterGenXPro GmbH Frankfurt am Main, Germany.
Diego RubialesInstitute for Sustainable Agriculture, Consejo Superior de Investigaciones Científicas Córdoba, Spain.
Maria C Vaz PattoInstituto de Tecnologia Química e Biológica António Xavier, ITQB, Universidade Nova de Lisboa Oeiras, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lathyrus sativus (grass pea) is a temperate grain legume crop with a great potential for expansion in dry areas or zones that are becoming more drought-prone. It is also recognized as a potential source of resistance to several important diseases in legumes, such as ascochyta blight. Nevertheless, the lack of detailed genomic and/or transcriptomic information hampers further exploitation of grass pea resistance-related genes in precision breeding. To elucidate the pathways differentially regulated during ascochyta-grass pea interaction and to identify resistance candidate genes, we compared the early response of the leaf gene expression profile of a resistant L. sativus genotype to Ascochyta lathyri infection with a non-inoculated control sample from the same genotype employing deepSuperSAGE. This analysis generated 14.387 UniTags of which 95.7% mapped to a reference grass pea/rust interaction transcriptome. From the total mapped UniTags, 738 were significantly differentially expressed between control and inoculated leaves. The results indicate that several gene classes acting in different phases of the plant/pathogen interaction are involved in the L. sativus response to A. lathyri infection. Most notably a clear up-regulation of defense-related genes involved in and/or regulated by the ethylene pathway was observed. There was also evidence of alterations in cell wall metabolism indicated by overexpression of cellulose synthase and lignin biosynthesis genes. This first genome-wide overview of the gene expression profile of the L. sativus response to ascochyta infection delivered a valuable set of candidate resistance genes for future use in precision breeding.

Indexed as

ascochytacandidate genesgene expressiongrass peaLathyrus sativusresistanceSuperSAGEtranscriptome

Identifiers

PMID25852725
PMCPMC4367168

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.