Evidence map›Paper›PMID 25851487›Full record

ArticleNature communications2015

RECQ5-dependent SUMOylation of DNA topoisomerase I prevents transcription-associated genome instability.

Min Li, Subhash Pokharel, Jiin-Tarng Wang, Xiaohua Xu, Yilun Liu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  6. Article
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  8. Review
  9. The BRCA1 BRCT promotes antisense RNA production and double-stranded RNA formation to suppress ribosomal R-loops.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Exploring the multifunctionality of SR proteins.Biochemical Society transactions · 2022
    Article
  11. R-Loop-Associated Genomic Instability and Implication of WRN and WRNIP1.International journal of molecular sciences · 2022
    Review
  12. SUMO: A Swiss Army Knife for Eukaryotic Topoisomerases.Frontiers in molecular biosciences · 2022
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. TRIM28 functions as the SUMO E3 ligase for PCNA in prevention of transcription induced DNA breaks.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Min LiDepartment of Radiation Biology, Beckman Research Institute, City of Hope, Duarte, California 91010-3000, USA.
Subhash PokharelDepartment of Radiation Biology, Beckman Research Institute, City of Hope, Duarte, California 91010-3000, USA.
Jiin-Tarng WangDepartment of Radiation Biology, Beckman Research Institute, City of Hope, Duarte, California 91010-3000, USA.
Xiaohua XuDepartment of Radiation Biology, Beckman Research Institute, City of Hope, Duarte, California 91010-3000, USA.
Yilun LiuDepartment of Radiation Biology, Beckman Research Institute, City of Hope, Duarte, California 91010-3000, USA.
City Of Hope National Medical Center · US

Funding

Understanding the role of RAD51C complexes in recombination and repairR01CA130910 · NCI · YALE UNIVERSITY · PI LIU, YILUN · 2008 to 2012
$1.4M
NCI NIH HHS R01 CA130910
6 · The paper itself

Abstract

DNA topoisomerase I (TOP1) has an important role in maintaining DNA topology by relaxing supercoiled DNA. Here we show that the K391 and K436 residues of TOP1 are SUMOylated by the PIAS1-SRSF1 E3 ligase complex in the chromatin fraction containing active RNA polymerase II (RNAPIIo). This modification is necessary for the binding of TOP1 to RNAPIIo and for the recruitment of RNA splicing factors to the actively transcribed chromatin, thereby reducing the formation of R-loops that lead to genome instability. RECQ5 helicase promotes TOP1 SUMOylation by facilitating the interaction between PIAS1, SRSF1 and TOP1. Unexpectedly, the topoisomerase activity is compromised by K391/K436 SUMOylation, and this provides the first in vivo evidence that TOP1 activity is negatively regulated at transcriptionally active chromatin to prevent TOP1-induced DNA damage. Therefore, our data provide mechanistic insight into how TOP1 SUMOylation contributes to genome maintenance during transcription.

Indexed as

Genomic InstabilitySumoylationTranscription, GeneticDNA Topoisomerases, Type IHEK293 CellsHumansProtein Inhibitors of Activated STATRecQ HelicasesRNA Polymerase IIRNA SplicingSerine-Arginine Splicing FactorsSmall Ubiquitin-Related Modifier ProteinsUbiquitin-Protein Ligase ComplexesDNA Topoisomerases, Type IPIAS1 protein, humanProtein Inhibitors of Activated STATRecQ HelicasesRECQL5 protein, humanRNA Polymerase IISerine-Arginine Splicing FactorsSmall Ubiquitin-Related Modifier ProteinsSRSF1 protein, humanTOP1 protein, humanUbiquitin-Protein Ligase Complexes

Identifiers

PMID25851487
PMCPMC7553879
OpenAlexW2067641318

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.