Evidence map›Paper›PMID 25850788›Full record

ArticleNature communications2015

Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck.

Hassan Zaraket, Tatiana Baranovich, Bryan S Kaplan, Robert Carter, Min-Suk Song, James C Paulson, Jerold E Rehg, Justin Bahl, Jeri C Crumpton, Jon Seiler and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 102 citations in OpenAlex.

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  17. Systematic synthesis of bisectedChemical science · 2022
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 6 countries.

Hassan Zaraket1] Department of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA [2] Department of Experimental Pathology, Immunology and Microbiology, Faculty of Medicine, American University of Beirut, PO Box 11-0236 Riad El Solh, Beirut 1107 2020, Lebanon.ORCID 0000000338076409
Tatiana BaranovichDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Bryan S KaplanDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Robert CarterDepartment of Computation Biology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Min-Suk SongDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
James C PaulsonDepartments of Cell and Molecular Biology and Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, MEM-L71, La Jolla, California 92037, USA.
Jerold E RehgDepartment of Pathology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Justin BahlSchool of Public Health, The University of Texas Health Science Center at Houston, 1200 Pressler Street, Houston Texas 77030 USA.ORCID 0000000175724300
Jeri C CrumptonDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Jon SeilerDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Michael EdmonsonDepartment of Computation Biology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Gang WuDepartment of Computation Biology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.ORCID 0000000216785864
Erik KarlssonDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Thomas FabrizioDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Huachen ZhuJoint Influenza Research Center (Shantou University Medical College &Hong Kong University), Shantou University Medical College, Shantou, Guangdong 515031, PR China.
Yi GuanJoint Influenza Research Center (Shantou University Medical College &Hong Kong University), Shantou University Medical College, Shantou, Guangdong 515031, PR China.
Matloob HusainDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Stacey Schultz-CherryDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Scott KraussDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Ryan McBrideDepartments of Cell and Molecular Biology and Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, MEM-L71, La Jolla, California 92037, USA.
Robert G WebsterDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Elena A GovorkovaDepartment of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Jinghui ZhangDepartment of Computation Biology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA.
Charles J Russell1] Department of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA [2] Department of Microbiology, Immunology &Biochemistry, College of Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.
Richard J Webby1] Department of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA [2] Department of Microbiology, Immunology &Biochemistry, College of Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.
St. Jude Children's Research Hospital · USScripps Research Institute · USShantou University · CNThe University of Texas Health Science Center at Houston · USUniversity of Otago · NZ

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Influenza virus receptors on human airway epithelial cellsR01AI114730 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2015 to 2023
$5.1M
NCI NIH HHS P30 CA021765NIAID NIH HHS HHSN266200700005CNIAID NIH HHS HHSN272201400006CPHS HHS HHSN266200700005CPHS HHS HHSN272201400006C
6 · The paper itself

Abstract

Human infection with avian influenza A(H7N9) virus is associated mainly with the exposure to infected poultry. The factors that allow interspecies transmission but limit human-to-human transmission are unknown. Here we show that A/Anhui/1/2013(H7N9) influenza virus infection of chickens (natural hosts) is asymptomatic and that it generates a high genetic diversity. In contrast, diversity is tightly restricted in infected ferrets, limiting further adaptation to a fully transmissible form. Airborne transmission in ferrets is accompanied by the mutations in PB1, NP and NA genes that reduce viral polymerase and neuraminidase activity. Therefore, while A(H7N9) virus can infect mammals, further adaptation appears to incur a fitness cost. Our results reveal that a tight genetic bottleneck during avian-to-mammalian transmission is a limiting factor in A(H7N9) influenza virus adaptation to mammals. This previously unrecognized biological mechanism limiting species jumps provides a measure of adaptive potential and may serve as a risk assessment tool for pandemic preparedness.

Indexed as

Genetic VariationAdaptation, PhysiologicalAnimalsAsymptomatic InfectionsChickensChlorocebus aethiopsDogsFerretsHEK293 CellsHumansInfluenza A Virus, H7N9 SubtypeInfluenza, HumanInfluenza in BirdsMadin Darby Canine Kidney CellsMultiplex Polymerase Chain ReactionMutationinfluenza virus polymerase basic protein 1NA protein, influenza A virusNeuraminidaseNP protein, Influenza A virusNucleocapsid ProteinsRNA-Binding ProteinsRNA, ViralViral Core ProteinsViral Proteins

Identifiers

PMID25850788
PMCPMC4403340
OpenAlexW1989276269

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.