Evidence map›Paper›PMID 25850675›Full record

ArticleDevelopmental cell2015

Transcriptome dynamics of the stomatal lineage: birth, amplification, and termination of a self-renewing population.

Jessika Adrian, Jessica Chang, Catherine E Ballenger, Bastiaan O R Bargmann, Julien Alassimone, Kelli A Davies, On Sun Lau, Juliana L Matos, Charles Hachez, Amy Lanctot and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
29.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 174 citations in OpenAlex.

  1. Article
  2. SNc Nuclease GenesInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Cell cycle in plant development and reprogramming.Development (Cambridge, England) · 2026
    Review
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  18. Article
  19. Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Jessika AdrianDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Jessica ChangDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Catherine E BallengerHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
Bastiaan O R BargmannBiology Department, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Julien AlassimoneDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Kelli A DaviesDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
On Sun LauDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Juliana L MatosDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Charles HachezDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Amy LanctotDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Anne VaténDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Kenneth D BirnbaumBiology Department, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Dominique C BergmannDepartment of Biology, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA. Electronic address: dbergmann@stanford.edu.
Stanford University · USHoward Hughes Medical Institute · USNew York University · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Control of epidermal self-renewing populations by bHLH and MAPK regulatory systemR01GM086632 · NIGMS · STANFORD UNIVERSITY · PI BERGMANN, DOMINIQUE C · 2009 to 2015
$1.7M
Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Four Laser, 18 Color Cell Sorter in the SSFFS10RR025518 · NCRR · STANFORD UNIVERSITY · PI HERZENBERG, LEONARD A · 2009 to 2009
$500k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR025518NCRR NIH HHS S10RR025518-01NCRR NIH HHS S10 RR027303NCRR NIH HHS S10RR027303NCRR NIH HHS S10 RR029668NCRR NIH HHS S10RR029668NIGMS NIH HHS NIH 1R01GM086632NIGMS NIH HHS NIH5T32GM007276NIGMS NIH HHS R01 GM086632NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

Developmental transitions can be described in terms of morphology and the roles of individual genes, but also in terms of global transcriptional and epigenetic changes. Temporal dissections of transcriptome changes, however, are rare for intact, developing tissues. We used RNA sequencing and microarray platforms to quantify gene expression from labeled cells isolated by fluorescence-activated cell sorting to generate cell-type-specific transcriptomes during development of an adult stem-cell lineage in the Arabidopsis leaf. We show that regulatory modules in this early lineage link cell types that had previously been considered to be under separate control and provide evidence for recruitment of individual members of gene families for different developmental decisions. Because stomata are physiologically important and because stomatal lineage cells exhibit exemplary division, cell fate, and cell signaling behaviors, this dataset serves as a valuable resource for further investigations of fundamental developmental processes.

Indexed as

Cell LineageGene Expression ProfilingArabidopsisArabidopsis ProteinsBiomarkersCell CommunicationCell DifferentiationGene Expression Regulation, PlantOligonucleotide Array Sequence AnalysisPhenotypePlant LeavesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSignal TransductionArabidopsis ProteinsBiomarkersRNA, Messenger

Identifiers

PMID25850675
PMCPMC4390738
OpenAlexW1971103184

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.