Evidence map›Paper›PMID 25849827›Full record

ArticleCurrent eye research2015

Evaluation of genetic polymorphisms in clusterin and tumor necrosis factor-alpha genes in South Indian individuals with pseudoexfoliation syndrome.

Sushil K Dubey, James F Hejtmancik, Subbaiah R Krishnadas, Rajendrababu Sharmila, Aravind Haripriya, Periasamy Sundaresan

Open access · greenAbstract read
In one paragraph

Article in Current eye research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Journal of ophthalmology · 2019
    Article
  4. Neuroinflammation in glaucoma: A new opportunity.Experimental eye research · 2017
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sushil K Dubeya Department of Genetics , Dr. G. Venkataswamy Eye Research Institute, Aravind Medical Research Foundation , Madurai , Tamil Nadu , India .
James F Hejtmancikb Ophthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health , Rockville , MD , USA .
Subbaiah R Krishnadasc Glaucoma Clinic, Aravind Eye Hospital , Madurai , Tamil Nadu , India and.
Rajendrababu Sharmilac Glaucoma Clinic, Aravind Eye Hospital , Madurai , Tamil Nadu , India and.
Aravind Haripriyad Intraocular Lens and Cataract Clinic, Aravind Eye Hospital , Madurai , Tamil Nadu , India.
Periasamy Sundaresana Department of Genetics , Dr. G. Venkataswamy Eye Research Institute, Aravind Medical Research Foundation , Madurai , Tamil Nadu , India .
Aravind Eye Hospital · INNational Institutes of Health · US

Funding

Inherited Ocular DiseasesZIAEY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 2009 to 2025
$27.0M
INHERITED OCULAR DISEASESZ01EY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 1991 to 2008
$4.8M
Intramural NIH HHS Z01 EY000272
6 · The paper itself

Abstract

purposeThe aim of this study was to explore the potential association of genetic variants across clusterin (CLU) and tumor necrosis factor-alpha (TNF-α) genes in South Indian individuals with pseudoexfoliation syndrome (PEXS) and pseudoexfoliation glaucoma (PEXG). MATERIALS AND

methodsA total of 523 individuals including 299 unrelated cases (150 PEXS and 149 PEXG) and 224 age- and ethnically-matched healthy controls were recruited for genetic analysis. Six single-nucleotide polymorphisms (SNPs) including, five CLU SNPs (rs11136000, rs2279590, rs9331888, rs9331931, rs3087554) and one promoter SNP (rs1800629) of TNF-α were genotyped in all study subjects. Genotyping of CLU SNPs were performed using the TaqMan allelic discrimination assay while TNF-α SNP was genotyped using polymerase chain reaction (PCR)-based restriction fragment length polymorphism (RFLP) analysis. Association analysis was performed by determining the distributions of genotype and allele frequencies, Hardy-Weinberg equilibrium, and chi-square p values and odds ratios as implemented in the Golden Helix SNP & Variation Suite (SVS).

resultsFive CLU SNPs did not show any significant differences in allele frequencies between patients and control subjects (rs3087554, p = 0.919, OR = 1.01, 95% CI: 0.77-1.33; rs2279590, p = 0.432, OR = 1.12, 95% CI: 0.84-1.51; rs9331931, p = 0.310, OR = 1.24, 95% CI: 0.81-1.89; rs11136000, p = 0.072, OR = 1.31, 95% CI: 0.97-1.76; rs9331888, p = 0.911, OR = 1.01, 95% CI: 0.78-1.31). The investigation of TNF-α SNP established a significant association with PEXS and PEXG (p = 0.042, OR = 0.61, 95% CI: 0.38-0.99). However, this association did not remain significant after Bonferroni correction.

conclusionsOur data suggest that genetic variants in CLU and TNF-α genes do not play a major role in the development of PEXS and PEXG in the South Indian population.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overClusterinExfoliation SyndromeFemaleGene FrequencyGenotyping TechniquesGlaucomaHumansIndiaMaleMiddle AgedPolymorphism, Restriction Fragment LengthTumor Necrosis Factor-alphaWhite PeopleCLU protein, humanClusterinTumor Necrosis Factor-alphaCLUpseudoexfoliation glaucomapseudoexfoliation syndromeSNPTNF-α

Identifiers

PMID25849827
PMCPMC11979627
OpenAlexW2093289294

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.