Evidence map›Paper›PMID 25849497›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Crystallization and preliminary X-ray diffraction analysis of the interaction of Aeromonas hydrophila MtaN-1 with S-adenosylhomocysteine.

Yongbin Xu, Chun Shan Quan, Xiaoling Jin, Xuanzhen Jin, Jing Zhao, Liming Jin, Jin Sik Kim, Jianyun Guo, Shengdi Fan, Nam Chul Ha

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yongbin XuDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Chun Shan QuanDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Xiaoling JinDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Xuanzhen JinCollege of Engineering, Yanbian University, Jilin Yanji 133002, People's Republic of China.
Jing ZhaoDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Liming JinDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Jin Sik KimDepartment of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Gwanak-gu, Seoul 151-742, Republic of Korea.
Jianyun GuoDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Shengdi FanDepartment of Bioengineering, College of Life Science, Dalian Nationalities University, Dalian 116600, People's Republic of China.
Nam Chul HaDepartment of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Gwanak-gu, Seoul 151-742, Republic of Korea.
Dalian Minzu University · CNSeoul National University · KRYanbian University · CNDalian Institute of Chemical Physics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prokaryotic 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (MtaN) is a multifunctional enzyme that can hydrolyze S-adenosyl-L-homocysteine (SAH) and S-methyl-5'-thioadenosine (MTA) to give S-ribosyl-L-homocysteine (SRH) and S-methyl-5'-thioribose (MTR), respectively. This reaction plays a key role in several metabolic pathways, including biological methylation, polyamine biosynthesis, methionine recycling and bacterial quorum sensing. Structurally, MtaN belongs to the MtnN subfamily of the purine nucleoside phosphorylase (PNP)/uridine phosphorylase (UDP) phosphorylase family. Aeromonas hydrophila has two MtnN subfamily proteins: MtaN-1, a periplasmic protein with an N-terminal signal sequence, and MtaN-2, a cytosolic protein. In this study, MtaN-1 from Aeromonas hydrophila was successfully expressed and purified using Ni-NTA affinity, Q anion-exchange and gel-filtration chromatography. Crystals of the protein in complex with the substrate SAH were obtained and diffracted to a resolution of 1.4 Å. The crystals belonged to the trigonal space group P3₁21 or P3₂21, with unit-cell parameters a = b = 102.7, c = 118.8 Å. The asymmetric unit contained two molecules of MtaN-1 complexed with SAH.

Indexed as

Aeromonas hydrophilaCrystallizationN-Glycosyl HydrolasesS-AdenosylhomocysteineX-Ray Diffractionadenosylhomocysteine nucleosidaseN-Glycosyl HydrolasesS-AdenosylhomocysteineAeromonas hydrophilaMtaN-1S-adenosylmethionine

Identifiers

PMID25849497
PMCPMC4388171
OpenAlexW2066396340

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.