Evidence map›Paper›PMID 25849403›Full record

ArticleActa crystallographica. Section D, Biological crystallography2015

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array.

Artem Y Lyubimov, Thomas D Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B Zeldin, Aina E Cohen, S Michael Soltis, Elizabeth L Baxter, Aaron S Brewster and 3 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Microfluidic Devices for High-Throughput In Situ Serial Crystallography.Advances in biochemical engineering/biotechnology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Data collection from crystals grown in microfluidic droplets.Acta crystallographica. Section D, Structural biology · 2022
    Article
  14. Article
  15. Article
  16. Versatile microporous polymer-based supports for serial macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Artem Y LyubimovDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Thomas D MurrayBiophysics Graduate Group, University of California, Berkeley, CA 94720, USA.
Antoine KoehlDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Ismail Emre AraciHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
Monarin UervirojnangkoornDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Oliver B ZeldinDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
Aina E CohenSLAC National Accelerator Laboratory, Stanford, CA 94305, USA.
S Michael SoltisSLAC National Accelerator Laboratory, Stanford, CA 94305, USA.
Elizabeth L BaxterSLAC National Accelerator Laboratory, Stanford, CA 94305, USA.
Aaron S BrewsterPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Nicholas K SauterPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Axel T BrungerDepartment of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305, USA.
James M BergerDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
Realizing New Horizons in X-ray Crystallography Data ProcessingR01GM095887 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2011 to 2014
$1.5M
Towards real-time XFEL data reduction with CCTBXR01GM102520 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2012 to 2015
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS GM095887NIGMS NIH HHS GM102520NIGMS NIH HHS R01 GM095887NIGMS NIH HHS R01 GM102520NIGMS NIH HHS T32 GM008295
6 · The paper itself

Abstract

X-ray free-electron lasers (XFELs) promise to enable the collection of interpretable diffraction data from samples that are refractory to data collection at synchrotron sources. At present, however, more efficient sample-delivery methods that minimize the consumption of microcrystalline material are needed to allow the application of XFEL sources to a wide range of challenging structural targets of biological importance. Here, a microfluidic chip is presented in which microcrystals can be captured at fixed, addressable points in a trap array from a small volume (<10 µl) of a pre-existing slurry grown off-chip. The device can be mounted on a standard goniostat for conducting diffraction experiments at room temperature without the need for flash-cooling. Proof-of-principle tests with a model system (hen egg-white lysozyme) demonstrated the high efficiency of the microfluidic approach for crystal harvesting, permitting the collection of sufficient data from only 265 single-crystal still images to permit determination and refinement of the structure of the protein. This work shows that microfluidic capture devices can be readily used to facilitate data collection from protein microcrystals grown in traditional laboratory formats, enabling analysis when cryopreservation is problematic or when only small numbers of crystals are available. Such microfluidic capture devices may also be useful for data collection at synchrotron sources.

Indexed as

Lab-On-A-Chip DevicesAnimalsChickensCrystallizationCrystallography, X-RayEquipment DesignModels, MolecularMuramidaseProtein Conformationhen egg lysozymeMuramidasecrystal harvestingmicrofluidicssample deliveryserial crystallographyXFELs

Identifiers

PMID25849403
PMCPMC4388268

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.