Evidence map›Paper›PMID 25849296›Full record

ArticlePloS one2015

Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.

Rebecca Lyons, Jiri Stiller, Jonathan Powell, Anca Rusu, John M Manners, Kemal Kazan

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Dynamic Hormonal Networks in Flax DuringMolecules (Basel, Switzerland) · 2025
    Article
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  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Identification ofMicroorganisms · 2023
    Article
  19. A Novel Effector, FSE1, Regulates the Pathogenicity ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rebecca LyonsCSIRO Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, QLD, Australia.
Jiri StillerCSIRO Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, QLD, Australia.
Jonathan PowellCSIRO Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, QLD, Australia.
Anca RusuCSIRO Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, QLD, Australia.
John M MannersCSIRO Agriculture Flagship, Black Mountain Laboratories, Canberra, ACT, Australia.
Kemal KazanCSIRO Agriculture Flagship, Queensland Bioscience Precinct, Brisbane, QLD, Australia; Queensland Alliance for Agriculture & Food Innovation (QAAFI), The University of Queensland, St Lucia, Brisbane, Queensland, 4067, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some of the most devastating agricultural diseases are caused by root-infecting pathogens, yet the majority of studies on these interactions to date have focused on the host responses of aerial tissues rather than those belowground. Fusarium oxysporum is a root-infecting pathogen that causes wilt disease on several plant species including Arabidopsis thaliana. To investigate and compare transcriptional changes triggered by F. oxysporum in different Arabidopsis tissues, we infected soil-grown plants with F. oxysporum and subjected root and leaf tissue harvested at early and late timepoints to RNA-seq analyses. At least half of the genes induced or repressed by F. oxysporum showed tissue-specific regulation. Regulators of auxin and ABA signalling, mannose binding lectins and peroxidases showed strong differential expression in root tissue. We demonstrate that ARF2 and PRX33, two genes regulated in the roots, promote susceptibility to F. oxysporum. In the leaves, defensins and genes associated with the response to auxin, cold and senescence were strongly regulated while jasmonate biosynthesis and signalling genes were induced throughout the plant.

Indexed as

ArabidopsisFungal ProteinsFusariumGene Expression Regulation, FungalPlant DiseasesPlant LeavesPlant RootsFungal Proteins

Identifiers

PMID25849296
PMCPMC4388846

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.