Evidence map›Paper›PMID 25849198›Full record

ArticleRNA biology2015

Incomplete splicing of neutrophil-specific genes affects neutrophil development in a zebrafish model of poikiloderma with neutropenia.

Prakash Patil, Tamayo Uechi, Naoya Kenmochi

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Immune-Enhancing Effects ofCurrent issues in molecular biology · 2026
    Article
  3. Article
  4. Review
  5. Genetics of Osteopetrosis.Current osteoporosis reports · 2018
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Prakash Patila Frontier Science Research Center; University of Miyazaki; Miyazaki , Japan.
Tamayo Uechi
Naoya Kenmochi
University of Miyazaki · JPFrontier Science Foundation · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Poikiloderma with neutropenia (PN) is a rare inherited disorder characterized by poikiloderma, facial dysmorphism, pachyonychia, short stature and neutropenia. The molecular testing of PN patients has identified mutations in the C16orf57 gene, which encodes a protein referred to as USB1 (U Six Biogenesis 1). In this study, we developed a zebrafish model of PN by the microinjection of morpholino antisense oligos to suppress usb1 gene function. Severe morphological defects, including a bent tail, thin yolk extension and reduced body length, were predominant in the Usb1-suppressed embryos (morphants). We also observed significantly decreased number of neutrophils in the morphants by Sudan Black staining. Interestingly, the splicing of genes involved in neutrophil differentiation and development, such as mpx, ncf1, ela3l and npsn, was aberrant in the morphants. However, the splicing of haematopoietic precursors and erythroid-specific genes was unaltered. Importantly, the neutrophil defects were almost completely rescued by co-injection of ela3l mRNA, the most markedly affected gene in the morphants. Our study demonstrated a possible role of USB1 in modulating the tissue-specific gene splicing that eventually leads to the impaired development of neutrophils. This zebrafish model could serve as a valuable tool to investigate the causative role of USB1 in PN pathogenesis.

Indexed as

RNA SplicingAnimalsCell DifferentiationDisease Models, AnimalExoribonucleasesGene Knockdown TechniquesMorpholinosNeutropeniaNeutrophilsOligonucleotides, AntisenseSkin AbnormalitiesZebrafishZebrafish ProteinsExoribonucleasesMorpholinosOligonucleotides, AntisenseUSB1 protein, zebrafishZebrafish ProteinsCHT, caudal haematopoietic tissueCRISPR, clustered regularly interspaced short palindromic repeatsGFP, green fluorescent proteinhpf, hours post fertilizationMO, morpholino antisense oligoMPN1, mutated in poikiloderma with neutropeniaPNpoikiloderma with neutropeniaRNA diseasesemi-quantitative reverse transcription and polymerase chain reactionsmall nuclear ribonucleoproteinssnRNPssplicingsqRT-PCRU6 biogenesisUSB1, U Six Biogenesis 1zebrafish

Identifiers

PMID25849198
PMCPMC4615382
OpenAlexW1949612534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.