Evidence map›Paper›PMID 25848871›Full record

ArticleThe ISME journal2015

The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin.

Jared Liu, Riceley Yan, Qiao Zhong, Sam Ngo, Nathanael J Bangayan, Lin Nguyen, Timothy Lui, Minghsun Liu, Marie C Erfe, Noah Craft and 2 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 113 citations in OpenAlex.

  1. Phage-Derived Endolysins TargetingAntibiotics (Basel, Switzerland) · 2026
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  11. Antibacterial activity and impact on keratinocyte cell growth ofCurrent research in microbial sciences · 2025
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  18. Review
  19. Antibiotics (Basel, Switzerland) · 2023
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Jared LiuDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Riceley YanDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Qiao Zhong1] Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA [2] Department of Laboratory Medicine, Suzhou Municipal Hospital, Suzhou Hospital Affiliated to Nanjing Medical University, Suzhou, China.
Sam NgoDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Nathanael J BangayanDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Lin NguyenDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Timothy LuiDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Minghsun LiuDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Marie C ErfeLos Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Los Angeles, CA, USA.
Noah CraftLos Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Los Angeles, CA, USA.
Shuta TomidaDepartment of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA.
Huiying Li1] Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, David Geffen School of Medicine, UCLA, Los Angeles, CA, USA [2] UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, CA, USA.
Institute for Molecular Medicine · USThe Lundquist Institute · USDigital Proteomics (United States) · USKindai University · JPSuzhou Municipal Hospital · CNUniversity of California, Los Angeles · US

Funding

MULTIDISCIPLINARY TRAINING IN MICROBIAL PATHOGENESIST32AI007323 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Peter John Bradley · 1988 to 2026
$8.6M
Population dynamics of P. acnes and their phages in the human skin microbiomeR01GM099530 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LI, HUIYING · 2012 to 2015
$1.4M
Metagenomic study of the human skin microbiome associated with acneUH2AR057503 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LI, HUIYING · 2009 to 2010
$1.2M
NIAID NIH HHS T32 AI007323NIAID NIH HHS T32AI07323NIAMS NIH HHS UH2 AR057503NIAMS NIH HHS UH2AR057503NIGMS NIH HHS R01 GM099530NIGMS NIH HHS R01GM099530
6 · The paper itself

Abstract

The viral population, including bacteriophages, is an important component of the human microbiota, yet is poorly understood. We aim to determine whether bacteriophages modulate the composition of the bacterial populations, thus potentially playing a role in health or disease. We investigated the diversity and host interactions of the bacteriophages of Propionibacterium acnes, a major human skin commensal implicated in acne pathogenesis. By sequencing 48 P. acnes phages isolated from acne patients and healthy individuals and by analyzing the P. acnes phage populations in healthy skin metagenomes, we revealed that P. acnes phage populations in the skin microbial community are often dominated by one strain. We also found phage strains shared among both related and unrelated individuals, suggesting that a pool of common phages exists in the human population and that transmission of phages may occur between individuals. To better understand the bacterium-phage interactions in the skin microbiota, we determined the outcomes of 74 genetically defined Propionibacterium strains challenged by 15 sequenced phages. Depending on the Propionibacterium lineage, phage infection can result in lysis, pseudolysogeny, or resistance. In type II P. acnes strains, we found that encoding matching clustered regularly interspaced short palindromic repeat spacers is insufficient to confer phage resistance. Overall, our findings suggest that the prey-predator relationship between bacteria and phages may have a role in modulating the composition of the microbiota. Our study also suggests that the microbiome structure of an individual may be an important factor in the design of phage-based therapy.

Indexed as

Host-Pathogen InteractionsAcne VulgarisBacteriophagesBase SequenceBiodiversityClustered Regularly Interspaced Short Palindromic RepeatsGenome, ViralHumansMetagenomeMicroscopy, ElectronPhylogenyPolymorphism, Single NucleotidePropionibacterium acnesSkin

Identifiers

PMID25848871
PMCPMC4542041
OpenAlexW2078389422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.