Evidence map›Paper›PMID 25848748›Full record

ArticleNature genetics2015

Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.

Bridget D Stuart, Jungmin Choi, Samir Zaidi, Chao Xing, Brody Holohan, Rui Chen, Mihwa Choi, Pooja Dharwadkar, Fernando Torres, Carlos E Girod and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 288 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
288citing papers in PubMed, 5 pooled it
37.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

288 citing papers in PubMed, 5 syntheses or guidelines pooled it, 459 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Guideline
  4. Pooled it
  5. Pooled it
  6. Trial
  7. Telomere Length and Use of Immunosuppressive Medications in Idiopathic Pulmonary Fibrosis.American journal of respiratory and critical care medicine · 2019
    Trial
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Clonal Signatures of Telomere Biology Disorders.Current hematologic malignancy reports · 2026
    Review
  14. Biogenesis and Regulation of Telomerase during Development and Cancer.Cold Spring Harbor perspectives in biology · 2026
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

228 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Bridget D Stuart1] Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA. [2] Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jungmin Choi1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Howard Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Samir Zaidi1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Howard Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Chao XingEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Brody HolohanDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Rui ChenDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Mihwa ChoiEugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Pooja DharwadkarDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Fernando TorresDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Carlos E GirodDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jonathan WeisslerDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
John FitzgeraldDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Corey KershawDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Julia Klesney-TaitDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Yolanda MagetoDepartment of Internal Medicine, University of Vermont College of Medicine, Burlington, Vermont, USA.
Jerry W ShayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Weizhen Ji1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Howard Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Kaya Bilguvar1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut, USA.
Shrikant Mane1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut, USA.
Richard P Lifton1] Department of Genetics, Yale School of Medicine, New Haven, Connecticut, USA. [2] Howard Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA. [3] Yale Center for Genome Analysis, Yale School of Medicine, New Haven, Connecticut, USA. [4] Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Christine Kim Garcia1] Eugene McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, Texas, USA. [2] Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
The University of Texas Southwestern Medical Center · USYale University · USHoward Hughes Medical Institute · USUniversity of Iowa · USUniversity of Vermont · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Pulmonary Fibrosis and Telomerase DysfunctionR01HL093096 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI GARCIA, CHRISTINE KIM · 2009 to 2024
$6.9M
ANTECEDANTS SEQUELAE OF CHILDHOOD ONSET DISEASEK12HD068369 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI SKAPEK, STEPHEN X · 2011 to 2020
$3.0M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001105NCATS NIH HHS UL1TR001105NHGRI NIH HHS U54 HG006504NHGRI NIH HHS U54HG006504NHLBI NIH HHS R01 HL093096NHLBI NIH HHS R01HL093096NICHD NIH HHS K12 HD068369NICHD NIH HHS K12HD068369NIDDK NIH HHS P30 DK054759NIEHS NIH HHS P30 ES005605NIGMS NIH HHS T32 GM007205
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is an age-related disease featuring progressive lung scarring. To elucidate the molecular basis of IPF, we performed exome sequencing of familial kindreds with pulmonary fibrosis. Gene burden analysis comparing 78 European cases and 2,816 controls implicated PARN, an exoribonuclease with no previous connection to telomere biology or disease, with five new heterozygous damaging mutations in unrelated cases and none in controls (P = 1.3 × 10(-8)); mutations were shared by all affected relatives (odds in favor of linkage = 4,096:1). RTEL1, an established locus for dyskeratosis congenita, harbored significantly more new damaging and missense variants at conserved residues in cases than in controls (P = 1.6 × 10(-6)). PARN and RTEL1 mutation carriers had shortened leukocyte telomere lengths, and we observed epigenetic inheritance of short telomeres in family members. Together, these genes explain ~7% of familial pulmonary fibrosis and strengthen the link between lung fibrosis and telomere dysfunction.

Indexed as

Telomere ShorteningAdultAgedAged, 80 and overAmino Acid SequenceCase-Control StudiesCells, CulturedDNA HelicasesDNA Mutational AnalysisExomeExoribonucleasesFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansIdiopathic Pulmonary FibrosisDNA HelicasesExoribonucleasesRTEL1 protein, human

Identifiers

PMID25848748
PMCPMC4414891
OpenAlexW1987722665

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.