Evidence map›Paper›PMID 25848047›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Compromised peroxisomes in idiopathic pulmonary fibrosis, a vicious cycle inducing a higher fibrotic response via TGF-β signaling.

Gani Oruqaj, Srikanth Karnati, Vijith Vijayan, Lakshmi Kanth Kotarkonda, Eistine Boateng, Wenming Zhang, Clemens Ruppert, Andreas Günther, Wei Shi, Eveline Baumgart-Vogt

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 101 citations in OpenAlex.

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  16. Oxidative Stress and Lung Fibrosis: Towards an Adverse Outcome Pathway.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. Direct Stochastic Optical Reconstruction Microscopy (dSTORM) of Peroxisomes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Gani OruqajInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany;
Srikanth KarnatiInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany;
Vijith VijayanInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany;
Lakshmi Kanth KotarkondaInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany;ORCID http://orcid.org/0000-0002-5393-1736
Eistine BoatengInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany;
Wenming ZhangSaban Research Institute, Children's Hospital Los Angeles, Los Angeles, CA 90027; and.
Clemens RuppertDeparment of Internal Medicine, Medical Clinic II, and German Center for Lung Research (DZL), Universities of Giessen and Marburg Lung Center, Giessen 35392, Germany.
Andreas GüntherDeparment of Internal Medicine, Medical Clinic II, and German Center for Lung Research (DZL), Universities of Giessen and Marburg Lung Center, Giessen 35392, Germany.
Wei ShiSaban Research Institute, Children's Hospital Los Angeles, Los Angeles, CA 90027; and.
Eveline Baumgart-VogtInstitute for Anatomy and Cell Biology, Medical Cell Biology, Justus Liebig University, Giessen 35392, Germany; Eveline.Baumgart-Vogt@anatomie.med.uni-giessen.de.
Justus-Liebig-Universität Gießen · DEChildren's Hospital of Los Angeles · USGerman Center for Lung Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a devastating disease, and its pathogenic mechanisms remain incompletely understood. Peroxisomes are known to be important in ROS and proinflammatory lipid degradation, and their deficiency induces liver fibrosis. However, altered peroxisome functions in IPF pathogenesis have never been investigated. By comparing peroxisome-related protein and gene expression in lung tissue and isolated lung fibroblasts between human control and IPF patients, we found that IPF lungs exhibited a significant down-regulation of peroxisomal biogenesis and metabolism (e.g., PEX13p and acyl-CoA oxidase 1). Moreover, in vivo the bleomycin-induced down-regulation of peroxisomes was abrogated in transforming growth factor beta (TGF-β) receptor II knockout mice indicating a role for TGF-β signaling in the regulation of peroxisomes. Furthermore, in vitro treatment of IPF fibroblasts with the profibrotic factors TGF-β1 or tumor necrosis factor alpha (TNF-α) was found to down-regulate peroxisomes via the AP-1 signaling pathway. Therefore, the molecular mechanisms by which reduced peroxisomal functions contribute to enhanced fibrosis were further studied. Direct down-regulation of PEX13 by RNAi induced the activation of Smad-dependent TGF-β signaling accompanied by increased ROS production and resulted in the release of cytokines (e.g., IL-6, TGF-β) and excessive production of collagen I and III. In contrast, treatment of fibroblasts with ciprofibrate or WY14643, PPAR-α activators, led to peroxisome proliferation and reduced the TGF-β-induced myofibroblast differentiation and collagen protein in IPF cells. Taken together, our findings suggest that compromised peroxisome activity might play an important role in the molecular pathogenesis of IPF and fibrosis progression, possibly by exacerbating pulmonary inflammation and intensifying the fibrotic response in the patients.

Indexed as

Signal TransductionAnimalsCollagen Type IDisease Models, AnimalDown-RegulationFemaleFibroblastsGene Knockdown TechniquesHumansIdiopathic Pulmonary FibrosisInflammation MediatorsInterleukin-6Lipid MetabolismLungMaleMembrane ProteinsCollagen Type IInflammation MediatorsInterleukin-6Membrane ProteinsPEX13 protein, humanPPAR alphaReactive Oxygen SpeciesRNA, Small InterferingSmad ProteinsTranscription Factor AP-1Transforming Growth Factor betaTumor Necrosis Factor-alphafibrosisinflammationlungperoxisomeTGF-β1

Identifiers

PMID25848047
PMCPMC4413321
OpenAlexW2018935597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.