Evidence map›Paper›PMID 25848046›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Evolution of the rapidly mutating human salivary agglutinin gene (DMBT1) and population subsistence strategy.

Shamik Polley, Sandra Louzada, Diego Forni, Manuela Sironi, Theodosius Balaskas, David S Hains, Fengtang Yang, Edward J Hollox

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  3. High-Resolution FISH Analysis Using DNA Fibers Generated by Molecular Combing.Methods in molecular biology (Clifton, N.J.) · 2024
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  7. Systems biology approach to functionally assess theProceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Shamik PolleyDepartment of Genetics, University of Leicester, Leicester LE1 7RH, United Kingdom;
Sandra LouzadaMolecular Cytogenetics Facility, Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom;
Diego ForniBioinformatics, Scientific Institute IRCCS E. Medea, 23842 Bosisio Parini, Italy; and.
Manuela SironiBioinformatics, Scientific Institute IRCCS E. Medea, 23842 Bosisio Parini, Italy; and.
Theodosius BalaskasDepartment of Genetics, University of Leicester, Leicester LE1 7RH, United Kingdom;
David S HainsDivision of Pediatric Nephrology, University of Tennessee Health Science Center, Le Bonheur Children's Hospital, Memphis, TN 38103.
Fengtang YangMolecular Cytogenetics Facility, Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom;
Edward J HolloxDepartment of Genetics, University of Leicester, Leicester LE1 7RH, United Kingdom; ejh33@le.ac.uk.
University of Leicester · GBIRCCS Eugenio Medea · ITWellcome Sanger Institute · GBUniversity of Tennessee Health Science Center · US

Funding

Genetic Variations and Development of Vesicoureteral Reflux and SequelaeRC4DK090937 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI HAINS, DAVID SULLIVAN, SCHWADERER, ANDREW LAWRENCE · 2010 to 2010
$1.5M
Medical Research Council GO801123NIDDK NIH HHS RC4 DK090937NIDDK NIH HHS RC4DK090937-01Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

The dietary change resulting from the domestication of plant and animal species and development of agriculture at different locations across the world was one of the most significant changes in human evolution. An increase in dietary carbohydrates caused an increase in dental caries following the development of agriculture, mediated by the cariogenic oral bacterium Streptococcus mutans. Salivary agglutinin [SAG, encoded by the deleted in malignant brain tumors 1 (DMBT1) gene] is an innate immune receptor glycoprotein that binds a variety of bacteria and viruses, and mediates attachment of S. mutans to hydroxyapatite on the surface of the tooth. In this study we show that multiallelic copy number variation (CNV) within DMBT1 is extensive across all populations and is predicted to result in between 7-20 scavenger-receptor cysteine-rich (SRCR) domains within each SAG molecule. Direct observation of de novo mutation in multigeneration families suggests these CNVs have a very high mutation rate for a protein-coding locus, with a mutation rate of up to 5% per gamete. Given that the SRCR domains bind S. mutans and hydroxyapatite in the tooth, we investigated the association of sequence diversity at the SAG-binding gene of S. mutans, and DMBT1 CNV. Furthermore, we show that DMBT1 CNV is also associated with a history of agriculture across global populations, suggesting that dietary change as a result of agriculture has shaped the pattern of CNV at DMBT1, and that the DMBT1-S. mutans interaction is a promising model of host-pathogen-culture coevolution in humans.

Indexed as

Biological EvolutionGenetics, PopulationMutation RateAgricultureAmino Acid SequenceCalcium-Binding ProteinsDNA-Binding ProteinsDNA Copy Number VariationsHumansLigandsMolecular Sequence DataMutationReceptors, Cell SurfaceStreptococcus mutansTumor Suppressor ProteinsCalcium-Binding ProteinsDMBT1 protein, humanDNA-Binding ProteinsLigandsReceptors, Cell SurfaceTumor Suppressor Proteinsagriculturecopy number variationDMBT1mutationstructural variation

Identifiers

PMID25848046
PMCPMC4413317
OpenAlexW2101732539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.