Evidence map›Paper›PMID 25847996›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolism.

Aurelia Battesti, Nadim Majdalani, Susan Gottesman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. mSystems · 2026
    Article
  3. Article
  4. Broad-spectrum tolerance to disinfectant-mediated bacterial killing due to mutation of the PheS aminoacyl tRNA synthetase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. RpoS and the bacterial general stress response.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  8. Article
  9. Rescue ofeLife · 2023
    Article
  10. Article
  11. Article
  12. Production of (2Synthetic and systems biotechnology · 2022
    Article
  13. Journal of functional biomaterials · 2022
    Article
  14. The ArcAB Two-Component System: Function in Metabolism, Redox Control, and Infection.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Identification ofGenetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Aurelia BattestiLaboratory of Molecular Biology, National Cancer Institute, Bethesda, MD 20892.
Nadim MajdalaniLaboratory of Molecular Biology, National Cancer Institute, Bethesda, MD 20892.
Susan GottesmanLaboratory of Molecular Biology, National Cancer Institute, Bethesda, MD 20892 gottesms@helix.nih.gov.
National Cancer Institute · US

Funding

Bacterial Functions Involved in Cell Growth ControlZIABC008714 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GOTTESMAN, SUSAN · 2009 to 2025
$20.3M
Proteolysis and Regulation of Bacterial Cell Growth ControlZIABC011203 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GOTTESMAN, SUSAN · 2009 to 2025
$11.0M
Intramural NIH HHS
6 · The paper itself

Abstract

RpoS, the stationary phase/stress sigma factor of Escherichia coli, regulates a large cohort of genes important for the cell to deal with suboptimal conditions. Its level increases quickly in the cell in response to many stresses and returns to low levels when growth resumes. Increased RpoS results from increased translation and decreased RpoS degradation. Translation is positively regulated by small RNAs (sRNAs). Protein stability is positively regulated by anti-adaptors, which prevent the RssB adaptor-mediated degradation of RpoS by the ClpXP protease. Inactivation of aceE, a subunit of pyruvate dehydrogenase (PDH), was found to increase levels of RpoS by affecting both translation and protein degradation. The stabilization of RpoS in aceE mutants is dependent on increased transcription and translation of IraP and IraD, two known anti-adaptors. The aceE mutation also leads to a significant increase in rpoS translation. The sRNAs known to positively regulate RpoS are not responsible for the increased translation; sequences around the start codon are sufficient for the induction of translation. PDH synthesizes acetyl-CoA; acetate supplementation allows the cell to synthesize acetyl-CoA by an alternative, less favored pathway, in part dependent upon RpoS. Acetate addition suppressed the effects of the aceE mutant on induction of the anti-adaptors, RpoS stabilization, and rpoS translation. Thus, the bacterial cell responds to lowered levels of acetyl-CoA by inducing RpoS, allowing reprogramming of E. coli metabolism.

Indexed as

Protein BiosynthesisProteolysisStress, Physiological5' Untranslated RegionsAcetatesBacterial ProteinsEscherichia coliEscherichia coli ProteinsMutationProtein StabilitySigma FactorUp-Regulation5' Untranslated RegionsAcetatesBacterial ProteinsEscherichia coli ProteinsSigma Factorsigma factor KatF protein, Bacteriaacetyl CoAClpXPpyruvate dehydrogenaseRpoSRssB

Identifiers

PMID25847996
PMCPMC4413282
OpenAlexW2085027454

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.