Evidence map›Paper›PMID 25847440›Full record

ArticleEnvironmental science and pollution research international2015

Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

Robert Duran, Patricia Bonin, Ronan Jezequel, Karine Dubosc, Claire Gassie, Fanny Terrisse, Justine Abella, Christine Cagnon, Cecile Militon, Valérie Michotey and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Environmental science and pollution research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Microbial ecology of hydrocarbon-polluted coastal sediments.Environmental science and pollution research international · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Robert DuranEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France. Robert.duran@univ-pau.fr.
Patricia BoninAix Marseille Université, CNRS, IRD, MIO UM 110, 13288, Marseille, France.
Ronan JezequelCentre de Documentation, de Recherche et d'Expérimentations sur les pollutions accidentelles des Eaux, 715 rue Alain Colas, CS 41836, Brest, France.
Karine DuboscCentre de Documentation, de Recherche et d'Expérimentations sur les pollutions accidentelles des Eaux, 715 rue Alain Colas, CS 41836, Brest, France.
Claire GassieEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
Fanny TerrisseEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
Justine AbellaEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
Christine CagnonEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
Cecile MilitonAix Marseille Université, CNRS, IRD, MIO UM 110, 13288, Marseille, France.
Valérie MichoteyAix Marseille Université, CNRS, IRD, MIO UM 110, 13288, Marseille, France.
Franck GilbertUniversité de Toulouse; INP, UPS; EcoLab (Laboratoire écologie fonctionnelle et environnement), 118 Route de Narbonne, 31062, Toulouse, France.
Philippe CunyAix Marseille Université, CNRS, IRD, MIO UM 110, 13288, Marseille, France.
Cristiana Cravo-LaureauEquipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France.
Centre National de la Recherche Scientifique · FRUniversité de Pau et des Pays de l'Adour · FRCentre de Documentation de Recherche et d'Expérimentation sur les Pollutions Accidentelles des Eaux · FRInstitut de Recherche pour le Développement · FRInstitut des Sciences Analytiques et de Physico-Chimie pour l'Environnement et les Matériaux · FRLaboratoire Écologie Fonctionnelle et Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession.

Indexed as

BacteriaBiodegradation, EnvironmentalDNA, BacterialGeologic SedimentsHydrocarbonsPetroleumPhylogenyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNAWater Pollutants, ChemicalDNA, BacterialHydrocarbonsPetroleumRNA, Ribosomal, 16SWater Pollutants, ChemicalBacteriaBioremediationCommunity structureCo-occurrence networkHarrowingMesocosmsOil pollutionT-RFLP

Identifiers

PMID25847440
OpenAlexW2087933837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.