Evidence map›Paper›PMID 25847247›Full record

ArticleThe Journal of biological chemistry2015

Crucial genes and pathways in chicken germ stem cell differentiation.

Zhentao Zhang, Ahmed Kamel Elsayed, Qingqing Shi, Yani Zhang, Qisheng Zuo, Dong Li, Chao Lian, Beibei Tang, Tianrong Xiao, Qi Xu and 10 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. The ChickenGenes · 2024
    Article
  4. A Study ofGenes · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Germline stem cells in human.Signal transduction and targeted therapy · 2022
    Review
  9. Frontiers in physiology · 2022
    Article
  10. Characterization of Alternative Splicing (AS) Events during Chicken (Animals : an open access journal from MDPI · 2021
    Article
  11. BMP4 activates the Wnt-Journal of cell science · 2021
    Article
  12. Cytotechnology · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 2 countries.

Zhentao ZhangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Ahmed Kamel ElsayedFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China, the Anatomy and Embryology Department, College of Veterinary Medicine, Suez Canal University, Ismailia 41522, Egypt.
Qingqing ShiFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Yani ZhangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China, ynzhang@yzu.edu.cn.
Qisheng ZuoFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Dong LiFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Chao LianFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Beibei TangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Tianrong XiaoFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Qi XuFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Guobin ChangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Guohong ChenFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Lei ZhangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Kehua Wangthe Poultry Institute, Chinese Academy of Agricultural Sciences, 225009 Yangzhou, China.
Yingjie WangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Kai JinFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Yilin WangFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Jiuzhou Songthe Department of Animal and Avian Sciences, University of Maryland, College Park, Maryland 20740, and.
Hengmi CuiFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China.
Bichun LiFrom the College of Animal Science and Technology, Yangzhou University, 225009 Yangzhou, China, yubcli@yzu.edu.cn.
Yangzhou University · CNChinese Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Male germ cell differentiation is a subtle and complex regulatory process. Currently, its regulatory mechanism is still not fully understood. In our experiment, we performed the first comprehensive genome and transcriptome-wide analyses of the crucial genes and signaling pathways in three kinds of crucial cells (embryonic stem cells, primordial germ cell, and spermatogonial stem cells) that are associated with the male germ cell differentiation. We identified thousands of differentially expressed genes in this process, and from these we chose 173 candidate genes, of which 98 genes were involved in cell differentiation, 19 were involved in the metabolic process, and 56 were involved in the differentiation and metabolic processes, like GAL9, AMH, PLK1, and PSMD7 and so on. In addition, we found that 18 key signaling pathways were involved mainly in cell proliferation, differentiation, and signal transduction processes like TGF-β, Notch, and Jak-STAT. Further exploration found that the candidate gene expression patterns were the same between in vitro induction experiments and transcriptome results. Our results yield clues to the mechanistic basis of male germ cell differentiation and provide an important reference for further studies.

Indexed as

Signal TransductionAdult Stem CellsAnimalsBiomarkersCell DifferentiationCell ProliferationCells, CulturedChickensEmbryonic Stem CellsFemaleGene Expression ProfilingGene Regulatory NetworksGerm CellsHigh-Throughput Nucleotide SequencingMaleReal-Time Polymerase Chain ReactionBiomarkersRNA, Messengerbioinformaticscell differentiationgene expressionmicroarraystem cells

Identifiers

PMID25847247
PMCPMC4505605
OpenAlexW2009053358

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.