Evidence map›Paper›PMID 25847245›Full record

ArticleThe Journal of biological chemistry2015

Two duplicated genes DDI2 and DDI3 in budding yeast encode a cyanamide hydratase and are induced by cyanamide.

Jia Li, Michael Biss, Yu Fu, Xin Xu, Stanley A Moore, Wei Xiao

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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  11. Utilization of a Strongly InducibleFrontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jia LiFrom the Departments of Microbiology and Immunology and.
Michael BissFrom the Departments of Microbiology and Immunology and.
Yu FuFrom the Departments of Microbiology and Immunology and.
Xin Xuthe College of Life Sciences, Capital Normal University, Beijing 100048, China.
Stanley A MooreBiochemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E5, Canada and.
Wei XiaoFrom the Departments of Microbiology and Immunology and the College of Life Sciences, Capital Normal University, Beijing 100048, China wei.xiao@usask.ca.
University of Saskatchewan · CACapital Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two DNA damage-inducible genes in Saccharomyces cerevisiae, DDI2 and DDI3, are identical and encode putative HD domain-containing proteins, whose functions are currently unknown. Because Ddi2/3 also shows limited homology to a fungal cyanamide hydratase that converts cyanamide to urea, we tested the enzymatic activity of recombinant Ddi2. To this end, we developed a novel enzymatic assay and determined that the Km value of the recombinant Ddi2/3 for cyanamide is 17.3 ± 0.05 mm, and its activity requires conserved residues in the HD domain. Unlike most other DNA damage-inducible genes, DDI2/3 is only induced by a specific set of alkylating agents and surprisingly is strongly induced by cyanamide. To characterize the biological function of DDI2/3, we sequentially deleted both DDI genes and found that the double mutant was unable to metabolize cyanamide and became much more sensitive to growth inhibition by cyanamide, suggesting that the DDI2/3 genes protect host cells from cyanamide toxicity. Despite the physiological relevance of the cyanamide induction, DDI2/3 is not involved in its own transcriptional regulation. The significance of cyanamide hydratase activity and its induced expression is discussed.

Indexed as

CyanamideEnzyme InductionGene DeletionGene DuplicationGene Expression Regulation, FungalHydro-LyasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUreaCyanamideHydro-LyasesSaccharomyces cerevisiae ProteinsUreacyanamide hydrataseenzymegene duplicationgene regulationHD domainhydratasemetabolismtranscriptiontranscriptional regulationyeast

Identifiers

PMID25847245
PMCPMC4432285
OpenAlexW2072529472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.